Array 1 189580-190340 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWCC01000002.1 Klebsiella pneumoniae subsp. ozaenae strain WCHKP030209 NODE_2_length_448235_cov_91.9532, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 189580 28 96.4 33 .............A.............. TACGCTAGACCGCAATGACCTACCTGATTTTGC 189641 28 96.4 33 .............A.............. TGATCCACCACGAAATACGAAAAGAAGACCTGA 189702 28 96.4 33 .............A.............. TATCGCTTAGCGCCACGTCAGGTTGAAGGTTTA 189763 28 96.4 33 .............A.............. TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 189824 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 189885 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 189946 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 190007 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 190068 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 190129 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 190190 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [190195] 190252 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 190313 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.2 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 199094-201805 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWCC01000002.1 Klebsiella pneumoniae subsp. ozaenae strain WCHKP030209 NODE_2_length_448235_cov_91.9532, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 199094 28 100.0 33 ............................ TACCTGTTTTGGTGTCCAGTAGCGCATGCGCAT 199155 28 100.0 33 ............................ TATTTTGCGTTTATCATTCTTCTATAAATTAGC 199216 28 100.0 33 ............................ CATCGAAGAAACAAAGGCAAAAGCGCTTGATGT 199277 28 100.0 33 ............................ TGGCATCACGACAGACAGCATTCGAAAGCGCGC 199338 28 100.0 33 ............................ CGGAAAGAGCACTCATTGCATCGACCAAACAGA 199399 28 100.0 33 ............................ CAAAGGAGCAAAATAATGGCAGAAGAAGTTGGC 199460 28 100.0 33 ............................ CATTGGGGATGTCTGCGATTTTAATGCAGCGAA 199521 28 100.0 33 ............................ CCACTCAGGGGCAGTTTGATGCAATGGTGTCGC 199582 28 100.0 33 ............................ TGACCTCAGCGGAAACATGGGGCGACTTGAGGC 199643 28 100.0 33 ............................ TGAGTTTTCTGATATTGTACTTGGCGGTCATAC 199704 28 100.0 33 ............................ CAGCGGATGGCAGAATCGCGGTGGAATTTACAC 199765 28 100.0 33 ............................ CAAAAGCAACGCGCCCACCAGCGTTGGCGTACC 199826 28 100.0 33 ............................ CGTGATGCCACTTGATTCATCTGGTGCATACAC 199887 28 100.0 33 ............................ TCCAAATGCTCTTGCTACAGCGCCCTGCACTCT 199948 28 100.0 33 ............................ CGGGGTAATGTATGGCCGCCAAAATGCGAGGTA 200009 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAT 200070 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 200131 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 200192 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 200253 28 100.0 33 ............................ TGATGTGGGAGTGTGGTGTAAAAAACTCTCTTT 200314 28 100.0 33 ............................ TCTTATGCACGGTGTTGGATACGAACCACTCCA 200375 28 100.0 33 ............................ TACCCCATTTCTGTCTTTTGTAAGCTCCATCAC 200436 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 200497 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 200558 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 200619 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 200680 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 200741 28 100.0 33 ............................ CATGACCCTCAGCGACAACCATATGGTCTGCTT 200802 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 200863 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 200924 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 200985 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 201046 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 201107 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 201168 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 201229 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 201290 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 201351 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 201412 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 201473 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 201534 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 201595 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 201656 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 201717 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 201778 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 45 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //