Array 1 5547-6672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSH01000013.1 Salmonella enterica strain CVM 43816 43816_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5547 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5608 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5669 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5730 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5791 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5852 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5913 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5974 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 6035 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6096 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6157 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6218 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6279 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6340 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6401 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6462 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6523 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6584 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6645 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22930-24593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSH01000013.1 Salmonella enterica strain CVM 43816 43816_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 22930 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 22991 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 23052 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 23113 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 23180 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 23241 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 23302 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 23363 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 23424 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23485 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23546 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23607 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23668 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23729 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23790 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 23851 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 23912 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 23973 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 24034 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 24137 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24198 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24259 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24320 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24381 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24442 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24503 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24564 29 96.6 0 A............................ | A [24590] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //