Array 1 1721328-1721965 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHQ01000020.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL04225 2015LSAL04225_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1721328 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 1721389 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 1721450 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 1721511 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 1721572 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 1721633 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 1721694 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 1721755 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 1721816 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 1721877 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1721938 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1738606-1740222 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCHQ01000020.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL04225 2015LSAL04225_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1738606 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 1738667 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 1738729 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 1738790 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 1738851 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 1738912 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 1738973 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 1739034 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 1739095 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 1739156 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 1739217 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 1739278 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 1739339 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 1739400 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 1739461 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 1739522 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 1739583 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 1739644 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 1739705 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 1739766 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 1739827 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 1739888 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 1739949 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 1740010 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 1740071 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 1740132 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1740193 29 93.1 0 A...........T................ | A [1740219] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //