Array 1 1278-1726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWV01000900.1 Streptomyces katrae strain NRRL ISP-5550 contig167.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1278 29 79.3 25 ..........T........CCC.CC.... GGGCGTGGAGATGGTCACCCTCCCC C [1297] Deletion [1332] 1333 29 100.0 32 ............................. GACATGGAAATTGATCAGCAGCGGGCCGTGGT 1394 29 93.1 31 .......T.........A........... TGGCAGGCGTCCATCCCGCACAGCCTCCCCC 1454 29 93.1 32 ......A..........A........... CACCGAGCCGGACACCAGCGCGGCAAGGACCC 1515 29 100.0 32 ............................. GCAGTACACGACCGCAAGCCGGAGCAGTGGGC 1576 29 96.6 32 ..............G.............. GCGCACAACCCGGTCCCGCCGGACGACAGCTA 1637 29 96.6 32 ............................T GAACTCCACGAACACTGCACTGTCGGGGACGT 1698 29 86.2 0 ......G...T......A..........T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.1 31 CTGCTCCCCGCGCCCGCGGGGATGACCCC # Left flank : GGTGCTGGGCCCTTCGCTGTACCCGGCGTCTCGGGGTTCCCACACACTCCGCACCTCCGAACTCCACCACATATCTGGCACACCGCTCGCGTCGCTGGGCTGAATTGATCCAGCGAAGGGGTGCCCGGCCGATGCTGCGGCGGCAGGTCAAGGCCTCCGAGGCGAGATCGCCTGCTGATGCGCCGGCGATCACGAGGTCAGCGACGCGTTACACGATGCTGCGCCATGCACGAATGCGGCCGGGCCCTCAGCGTCGCCTCCTGGCCCGTGAGCAAGTCGGTGTGGACGGCGTCCTGGAGGAGGTTGGTGGCCTCCTGCGATGAACGGGGTACTTCCCAGACTGCGGCTTGGTGGTGGCGCTTCAGTTCGGCAGTGCGCTGCAGTGAGTCCAGCCTGCCAGTCGCGAGCAGTGCAGTCGGCGATGTATATCCGTTATGCCGGAATCGGCGATAGTGCTTCAGGAGGAGCCTTCGCCGCTCTAAAATGGCAGGTCAGTTAGT # Right flank : TCTGCCTCGCAGCGATAGTTGTCACCTGGCAGCGCAATCTGTCACCGCACGACCGTTCGCCTTCGTCGATGGCCGGCGTCTGTTGTCCTGTCGCAGTGAGCCTGTGGGATTCTCACCGCTTCTCGTTCGTGCTGTCGGATTCTCACTGCATCGCGCGTTGAGTGACGACGTTTGCCCCGTAGGTGGGTTTTGAGCCCGTCCTCCTGGCCCTGGAGGGCGGGGCTTCGTTGTGCGGGGGCTGTCGCACTCGCGCACGCCCCCGTCGTGCCGTGTAGTCGTTTCCCCGCTCCTGGGTAGGTTGCCGTGTACCGACACTGGGGAGGGCACATGCTGAAGAAGATCGCCGCCATGGGGGCGGCTGGTGTGCTGTGCTGGGGACTGAATACGGCTCCGGCGAGCGCGGCGGCCACGATGGAGTACGTGCACATCGAGAGCGTCGCGGACGTGGGTGAGTGCCTGGACTACCGGTCCGACTGGGGGCCGTACACGACGACGTGCAA # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32-238 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWV01000903.1 Streptomyces katrae strain NRRL ISP-5550 contig167.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32 29 100.0 32 ............................. TGGGTGTGGAACAAGATCAAGGGTGTCTGGGA 93 29 96.6 30 ...........G................. ACCTGGATGACCTTCGAGGTCGATGTCACG 152 29 86.2 29 .CCTG........................ TCGCGGCCTATGACGGCCAGGAGCATGAC 210 29 79.3 0 .GA...........T...A..G.....G. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 90.5 31 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : CTGCCGCACTGAAAGTTGCAGGTTAAGAAGCC # Right flank : CTACCATGCCCCCTCACCCCTGCCGAGCGGCGTGGCCTGACCCCGCTGCTGCGGTCTCACGTCCGGCCCTACGGGGAGGTGGACCTGGCTGCGGACTCCCGCCTGCACCTCGCTGCAGGCTCGACCTTTCCCCGCTCTCCTAGCGCTGCGGACGTCGAGCAGTCGGCGCTGACCCGCACAGCTCCGTGAGCCCCTGCTTTTCATCACCGCAGTCACCTCCGTAGGGCGAGATGAGGCCGGCTTCGATGGTTCGGGAACCGAAGGGGGAATCGCGCCGCACGGCTGACGAGGCGGCACAGATAACCTGCGCGAGTGAAGCGGATTCAACGTGCCGCCGGCGCGGTCATCGGCTCAGCGGTGGGTGACGCCCTGGGTGCCCCCTTCGAGTTCGGTCCTCAGGGAGTGTTCTCCGCGCGGTTTCCCACGCCCGGTGCCGGTGGCGAGATGTGCGGAGGCGGCGGCTGGGACCCCGGCGAGGCCACTGACGACACGCAGATGGC # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 353-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWV01000964.1 Streptomyces katrae strain NRRL ISP-5550 contig188.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 352 20 69.0 32 ---------.................... CACAAGCGGCCCAGTCTCCGAACCTGGTGACA 300 29 100.0 32 ............................. GGCCCTTTCGGCTTGGTGGTGGAGGGACGGCG 239 29 96.6 32 ............................T CGAGTGATCCGCGTCACAGAGTGTCTGGATCG 178 29 96.6 32 ..........T.................. GTCTACGTCACCAGCGACATCGGGCAGGTCGA 117 29 100.0 30 ............................. CCGCTGGGGGAAAGCTCATGGCACGCTCCA 58 29 75.9 0 AGCTG.T..C................... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 89.7 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : TCCC # Right flank : CCCGCCTCCGCCCAGCCGGAACTCCCCCAG # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [10.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7830-7679 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWV01000963.1 Streptomyces katrae strain NRRL ISP-5550 contig188.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7829 29 100.0 32 ............................. GGGCGCTGTGGCTGGAGACGTGGCCGGGAGAC 7768 29 100.0 32 ............................. GCCACCCGCACCTGTCCGTCGTACCGCCCATG 7707 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : CGCGTGCCTTGGCAGGGACCGGGGGCGCGG # Right flank : GCTGCGAGGGCCTACATAACGAGACGTACCTCAAGAAGCGACAGCCGACCGCCGGCAAGCGATCTACACCCCAGACAACCGACCAGCACGAGTACCCGGGGCCCGGTCACACCGGCCCTTTGACCTGCGATTTCAAGTTGGCGGCAACTCTGTGAAGTCCACCGCTCGCCCGTTGGATGGCCGCAGTATGAGTGCCAACTTGCAAAAGCCTGCTGGTTATCTTGGCGGGAAGGGCTGCGCATTGTTCATGTGTCTGGGTACCGTGCCTTTGAGTCCACGCATGGTGGCCCTGTGTGATCTCTGCTCCCTGATGCCCCAAGGGGATGATCCCTGTGCGTGCTCAGCATGATGTTGCTCCCCACTCTGGTGGGGATAGTGATGTCTTTGGCCATGTCGAACACTTCCTCAACTGTGCATGCTCAGCGTCAAAAGGCCTGCGAAACAGAGCTATGGCCGAGAGGTAATGGATCTTGGAAGGATGCGGTAGCGTCTCAGCTGAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 338-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWV01000965.1 Streptomyces katrae strain NRRL ISP-5550 contig188.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 337 29 100.0 32 ............................. CACGAGGCCATCGACATCCTGGCGAAGTACGA 276 29 100.0 32 ............................. TCGTCGAGGAGAGCGTCGAGGGTGTCGAGAGA 215 29 100.0 32 ............................. ACGAGCCTCTCCATCACGCCACCACCTTCACG 154 29 100.0 32 ............................. GGAGTCGGCCGCATGGTATCCGAAGTCACCTA 93 29 100.0 33 ............................. TGCGGTCTGACGGCGCCGCGGCTGCGGTACTCG 31 29 96.6 0 ...........C................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 99.4 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : GTG # Right flank : CGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1156-706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWV01001310.1 Streptomyces katrae strain NRRL ISP-5550 contig292.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================== ================== 1155 29 100.0 32 ............................. CGAGACGGTCACCGCCCGCCTGCCAACCGAGG 1094 29 93.1 32 .........C..A................ GACAAGCGCCGATACACCTTGGCGTACGGCGG 1033 29 96.6 32 ..........T.................. CTCGCCCAGGCACACGAGCGCTGGGGAGAACT 972 29 100.0 31 ............................. CACGCTCCAGAGCCTGGTGACCGGCGCCCCC 912 29 93.1 33 ................TC........... GACTCCACACCGGCGCCGGTGCAGCCACACCGA 850 28 93.1 88 ..........T.............-.... CAAGCTCTGGCCCATCCACGCCCAGCCGGTGTGCTGCTCCCCGCGCCCGCATCCCAGCGCCGGAGGCTGAGCCGTCCTCAGGGTCCCC 734 29 75.9 0 T.......A...AGT..A...T....... | ========== ====== ====== ====== ============================= ======================================================================================== ================== 7 29 93.1 42 CTGCTCCCCGCACCCGCGGGGATGGACCC # Left flank : GCGGGGAGCAGCGGGTTCTCCCAGCGGGTGGCCTGC # Right flank : GGGTGTCTGGCCAGGGCGGTGCGTTGAAGAGACGGCCTTTCAGTCGTAGAAGAAGAGCTCAAGGTCCTCGACGGAGCCCGGACCGGTGAGGAAGCCCTCGGCCTTCGCGATCTCGTGTTCTGGCGGCAGCTCCCCCTTCAGGAGCTGCCGCATCCAGATTTCTCCTTGCTCGCCGATGGCGTAGATGCCGGACAGCAGCTCGGCCATGCCCGCAGGGCGCGGTGGGCGGTGTCCTGCGACCGGCTGGAGTACCCAACCGCCTGACCGGGCAGCGAGCCGCAACACTCCGGCCCAGTTCGCGATTCTCCCGATGCGTACGTGCCACGAGTCCTCGGTGAACGGGGCCATCCGTCCGCCAGAAAGGGGGTTTGTGGCGGCGCGGATGTCCTTGATGACCTGCCGTTCCACGGTGTCACGGATCCAACGCTCTTCCTGCGCTTCTTCGATGGCGGCCTCCCACCACTCCCACGCGCCTTCGAATCGGTCCGTGAATGTGTCCA # Questionable array : NO Score: 4.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.79, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1566-1355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWV01000666.1 Streptomyces katrae strain NRRL ISP-5550 contig117.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1565 29 100.0 32 ............................. AGGCCCAGCCGGGCCGCGCCCGACCGGCTGCT 1504 28 93.1 32 ........-..A................. CTGTGGACTGTCGTGGAGACGGTCCGCCGGGT 1444 29 100.0 32 ............................. TGGCTCCGTTATCAAGAAAGTTCAGTCCCTTC 1383 29 75.9 0 ....................A..CCATGA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 32 CTGCTCCCCGCGCCCGCGGGGATGACCCC # Left flank : TCGACCTCGTCGAGCAGATCCTCGTCTCGCACCACTTCACCCGCGAGGGCGAAGACGGCCCCTACCGCCGCGAAAACTCCCGGCACCGATACGCCTGGCCGGCGGAGCTCGACCTGATGGCACGGATCGCCGGGCTCGAGCTGGAACGCCGCGTAGCGGACTGGAACGGATCCCCGTTCACCCAGGACTCCACGAAGCACATCTCCGTATGGCGCAAACCAGCCTGAGGCCAGCCACGGCAGGCCGTCAACGCAGGCCGTGCCTGTCTTGAAACCCCTACTGGCGGTCCAGACTTCGTCAGCAGATCAGCGCGCATCCGAGGACGCGGAAGGAACCGTGGACGTCATCGCGGACCTCCCAACGGCCTTGCAGGCGACCCCTCTCGCCCTCAACACGCAGGCTGCGCTTGAGCCGATGTGGCGCTTCATCCGCAAATGTCGCTATCGATGAAAGTGCTTCAAAATGGTGTAGTGCTCGTCTATCGTTGCAGGTCACGAAGC # Right flank : GACGGGGGGAGAGCGGGTCCACGCCGATGATCTCCACGTGCCAGCCGCGTGCGGTCAGGCCGCGTTCCAGGCCGGCGGCGATGTCGGCCATGGGAGCGGGGTTCTCGGTGGCGATGTCGAGGTCCTGGCTGACGCGGTTGACCAGGCCGTGGGCCTGGACGGCGTACCCGCCGACGAGGACGAGGGCGTAGGGGGAGTCGATGTCGATCACGGCGGCGAGGTGCCGGCGGTGCAGACCGGTGAGGTTCACGCCGCGGCGGATTCGGCCGAGGCTGCCAGCTCGGGGAAGGCTTCCTCCCAGGCCTGCCGGACGTGCCGGCTGACCAGGGTGCGCAGGACCGGCCACTGGGCCAGGAGCAGGTCCCGGTGGAGGAGCTTCACCAGGTCCTCGTGCTGGCCCTCGGCCAGGACCGTGCGGTACAGGCCCATGCGCAGGCGCGGCCGGTCCAGGTAGTAGGAGCGCAGCCCGGACCACGCGACGTGCAGGGGCAGGTCGACCA # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27-237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZWV01001387.1 Streptomyces katrae strain NRRL ISP-5550 contig318.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27 28 96.6 32 ..-.......................... GCACCCTGGTCCTGGACGTACTGCCCGCCACG 87 29 100.0 32 ............................. AACTGAGCAGACGGCCCGAGCCCCCTCCGCCC 148 29 100.0 32 ............................. CCCTCGCGTCCCCCCTGCGGCGGCGCATCTCC 209 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 CTGCTCCCCGCACCCGCGGGGATGACCCC # Left flank : GCCGGAACATCTTCCACAGCGGGGCCC # Right flank : AACTGAGCAGACGGCCCGAGCCCCCTCCGCCCCTGCTCCCCGCACCCGCGGGGA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.30,-14.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [13.3-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //