Array 1 1401-1211 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQR01000033.1 Photorhabdus sp. CRCIA-P01 scaffold33.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1400 28 96.4 14 .............T.............. ATTGTCGAATACAA Deletion [1359] 1358 28 100.0 32 ............................ AGAACGCTGACTAACAATACACTTAACTGTTA 1298 28 100.0 32 ............................ TCAAGATGTGATTTTAGAAAAGTCTGATGGAA 1238 28 85.7 0 .......................TAT.T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 26 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGTTGATGTATGAAGCTTTACAGCCCGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATTATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAGCGTGAAGGCTATGCCAAGAAATACCTGATGATCAATGGAGTCTGGCAGGATCACGTATTAACCGCATTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAGTTAGTAATGATGAATTAAATCACCGTTAAAAATCTGCTTTCTCCACACCTTATTTTTGACCCTTTTTTAAGGACTGATTTTAATTTATTGATTTTTAATAAAATATTATTTATCTTGAAAAAAGGGTTTTTTCATTGTTTTATTAATATATGCTTTAACTGTCAGCAGGTTAAAGTTAATATGTAACAAA # Right flank : TAACGGAGGCAACCATGAGTCATACCCGTTACGAAACTGATGTGGTCGCTTGGGCGAATGAGCAAGCAGCATTATTGCGTGCAGGTAAATTCTCTGAGATCGATATAGTTAATATTGCCGAGGAAATTGAGGACGTGGGCAAGAGTGAAAAACGTGAACTAGCAAGTCGCATGGCAGTTTTGTTGTCCCATCTTTTAAAATGGCAATATCAACCTGAGCGTCGTGGTTCAAGTTGGCAACGAACTATCAGGGAACAGAGAAAAGCACTGGCATTGCATATAAAAGAGACACCTAGCTTGAAAAGCACAATTGCTGATGAAAACTGGTTTGCGAAAGTTTGGGCTGATGCAGTTTCTTCCGCTGTCGATGAAACAGGACTGGATATGTTCCCGGATGAATGTATCTGGAATATAAATCAGATCTTTTCTCAAGAGTTCTATCCTGAATAAACTTCAATAAGTTGACTTATTCGGCGCATTGACTTCGGTTGGTGCGCTTTT # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.69, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 218205-216320 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQR01000001.1 Photorhabdus sp. CRCIA-P01 scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 218204 28 100.0 32 ............................ ACTTCGCTACTGATGTTTGGGTCATTGGCATA 218144 28 100.0 33 ............................ AAAAAATCCAACCCTCGTCCCAAATTTTAATAT 218083 28 100.0 29 ............................ GCTATGGCAACGAAAACCAGCACTGACGA 218026 28 100.0 32 ............................ TGGAATCCAAGCCGGAAAGCAATACTTAAAGT 217966 28 100.0 32 ............................ TAACCAAAGAGAACGGGCCGATGATTGCCAAA 217906 28 100.0 32 ............................ GGCGTTAAGCGGCAGGTCCGAAGCCCAATCTG 217846 28 100.0 32 ............................ TCATATCTAGCTGTAATTGACTGGCCTCATCC 217786 28 100.0 32 ............................ GATTGGAGTAGCAATAATGGTTAAAGTACCAA 217726 28 100.0 32 ............................ TCTATTTAACAATCTCAGTTCGTAATTTTCAC 217666 28 100.0 31 ............................ GCTTGCATTTACAGATTTATGAGCTTGAGGC 217607 28 100.0 32 ............................ TTCAAGGCTGGTAGCAAATGATATAGTTCTAT 217547 28 100.0 32 ............................ TACTACGTAAGTAGGGAATCTACACCTGGATC 217487 28 100.0 32 ............................ CAAAAATGGAGTCCCGAACTTAGCGCACATTT 217427 28 100.0 32 ............................ GATAACGACGTACAGGCCGCAACGCAGCGTGA 217367 28 100.0 32 ............................ TTACAGAGAACTGGACATTTTTGTCAAACCGC 217307 28 100.0 32 ............................ TGGCGCATTTGTTTTTCAATCTCATGCAATGA 217247 28 100.0 32 ............................ ATCAATCGCAAAAATAAACGGTTCCAAGTCAC 217187 28 100.0 32 ............................ ACTGAACGTTAGCATCCCCTCAGAGGAAAAGA 217127 28 100.0 32 ............................ TCAATCGCCACGGTAAAGCTAACACTGTGTAT 217067 28 100.0 32 ............................ TTTCAGCAGTTCTTCGCGATGTTCCAACCTCA 217007 28 100.0 32 ............................ GTTCATGATAATATTGATACTGTTAGTGACAA 216947 28 100.0 32 ............................ TTTTTGTCCTCGATGCTTAAAAGAAGCTTTGT 216887 28 100.0 32 ............................ ACAGTAATAATATCTATTGCCTGGTTCTTGCT 216827 28 100.0 32 ............................ TAAGGTTAAGAATAAGGACTTCTTTTCTAACC 216767 28 100.0 32 ............................ AGTCTGTTTAATTATCTTTGCGACATTAATTC 216707 28 100.0 32 ............................ TGATTGGGAAACGGGTGAGAGAGCACGCCGTG 216647 28 100.0 32 ............................ TCATGCTCCTTAATATCGATAAACAACTGAGA 216587 28 100.0 32 ............................ TGATTAGTTACCTCGTTTGTTACCTCAAAATC 216527 28 100.0 32 ............................ AGAGATGGCTAAGGTTACTGTCCTGCGAGAAG 216467 28 100.0 32 ............................ TGTGTCATAGTGCTAACATCAAGCGTTCCGAT 216407 28 100.0 32 ............................ TCTAACGTGTCCGAAAATTCAGAATTTAGCTT 216347 28 82.1 0 .....................GGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCTGTAGCAATTGATAATAGCGCTTCATCTGGAAGCCAGTTATCTAATATAACAACAGCGGCGGGGTTGCCAGAAAATTGGCGATCTGTAAATGCATCAACATGATAGATGGGTAGTGAAATCATTTGCATCTCTCTTAAAATAGGGTTAGTCATGAAAAAGGGATCAATGTTCTTAATTTTATTCAAAAATTACCCGCTATTTTATACAACTATATGTAATCGGGAAGAGAGTAAGCCGCTCAGTTTTAAGATATTTAGTAAAAACCGCCGTAAACCCTTGCCCAGTGCGAGGATATCGCAAAAGGTTAAGGTCACTTTACCGAAACATTGGGTATTGTTGTATTAACCAGATATGCGACCCTATTTTGACCCTTTTTTTGTGTCTGATTTTAACTTATTGATTTTTATATCATATTATATAATGCTTATAAAAAGGGTTTTTCTGCTTTTTGTCATTATGTTCTTTAATAATCAGTAAATTAAAGTTAATATCTAACT # Right flank : TCGATTGAGTGCGCTAAAATTAAAATAAAGAAGTCTATTTTCTACCTGATGAGCATTAATTCTTATGCTTTTGAGCATACTCTTCACTGTTAATCCATTGATGGTCTTTTTCCCAGGTAAATAGCCATTTATGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCAGCAATGGTTGCCACTGGGTGATAGCCTTTGGGAACCATTACCGCATCTTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACGCGTTGCATGCAGAATCCTTGAGATGGATTCAAACGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTATCGGTATCGTGTTTATGGCTAGGGTAGGAACTGGTGCAGCCTTCACTGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTGTTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTTCCACGTTGTTCTGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 232215-229788 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQR01000001.1 Photorhabdus sp. CRCIA-P01 scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 232214 28 100.0 31 ............................ GATAACCAATAATGACGCTGCCGATGTAAGC 232155 28 100.0 32 ............................ AAAAAATGGACGGATACGATGGATCGAGCATC 232095 28 100.0 32 ............................ TATATTCCCAATATGCAGGATCACCAATTTCA 232035 28 100.0 32 ............................ ACTCGGAAATGAGCTGTAATTAGTCAATTGGC 231975 28 100.0 32 ............................ CAAGTCTCCGTCCACTTCATTAGCGAGTGCAC 231915 28 100.0 32 ............................ ATTGAATTTCCGATTGCCCGGTAACGGTGACC 231855 28 100.0 32 ............................ TTTGTTTACCCACTATATTTCTGTGAGGCATA 231795 28 100.0 32 ............................ TGATATTCGGCCATCGTCAATGCGACGCCTTT 231735 28 100.0 32 ............................ TGAATCGGCATACGGTTTCATCATATTGTTAA 231675 28 100.0 32 ............................ AATTTCTTCGTAAAGAACGTGACAGATATAAA 231615 28 100.0 32 ............................ GGATTGATGCAAGATATCGCTGATAAGACAGA 231555 28 100.0 32 ............................ TCAAACTTAAGCCAAGTTCCCCGTTCTGAAAA 231495 28 100.0 32 ............................ TACAGTAAGGACTTTTGAGATGAAGATTAAAA 231435 28 100.0 32 ............................ TTAACCTGATTCCTGATCCCCTTAACCCTATA 231375 28 100.0 32 ............................ GCTGGTTATATTTGATACTGACACATATTTCT 231315 28 100.0 32 ............................ ATTGATTGTAAGCCACCTTTTGTAGGTATAAC 231255 28 100.0 32 ............................ TTTACTTGCGTTGCTTCAAATAAATCGGGGAA 231195 28 100.0 32 ............................ AGAAGCGACGAGCGCACCCATTGAGGGGGTAG 231135 28 100.0 32 ............................ TAACCTGATTAATTATCATTACATCATAACGA 231075 28 100.0 32 ............................ ACTACACCCCAAAACCACTTTTACCGGAGGTA 231015 28 100.0 32 ............................ TTCAATTGTATATGGGTGGCACCATGACCGAG 230955 28 100.0 32 ............................ TTTTTTCGGCGGTGCCTGAAACTCAGCGTCTC 230895 28 100.0 31 ............................ CCCCGGCCATCCGGTACTAATTGATCACAAT 230836 28 100.0 32 ............................ ATATGATTAACTCACCGCAGCCCACTCGAAAT 230776 28 100.0 33 ............................ CTTTTTCATATATCCAAATTTCTCTATTGCTTT 230715 28 100.0 32 ............................ TGATAGGTTAATGCCTGATATTTCATTAGGAA 230655 28 100.0 32 ............................ TCTACGCTCAGTTACTATAAACTTAGTCCAGT 230595 28 100.0 32 ............................ TGCGGAAATAGTCGAGAAAAACGGCGAGTTAT 230535 28 100.0 32 ............................ TCATAACAATTAAGCTCAATGTTCGGGAGCAT 230475 28 100.0 32 ............................ CCATAAGGCTGTGCGTCATAAGTACCTTTATA 230415 28 100.0 32 ............................ TGATTTAAACCCATTAACCCCGGTATTGGACC 230355 28 100.0 32 ............................ ACAATGAACTTGTGAAAAATTGGCTTGATGAT 230295 28 100.0 32 ............................ ACAAACGCGGCTTACATCAACGGCAAATACCC 230235 28 100.0 32 ............................ TCGATTTATCCCGTTCGGGGCTCGCGCATGGG 230175 28 100.0 32 ............................ AGAAGACATGTTCTCAGCATCTCGGCGTGATA 230115 28 100.0 32 ............................ TGCCTTAATTGCCATAGCGCATAAATATAAAG 230055 28 100.0 32 ............................ TTTTAAGTCAGCGTACAGGTTGTTACCCATCT 229995 28 100.0 32 ............................ AATAACATTCAGTGCGCCAATTAGCATGGCTT 229935 28 96.4 32 .C.......................... TGTAGGAAACTACAAGCAGAATGAAAAATACT 229875 28 96.4 32 ...........................G TTGGGTACTACTAACGCGCATTAATCCAAATA 229815 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGAATATGAAAAATGTGGGATAGTAAAAATCGTAATGAATTATTTAAAGGCATTCGAGTTTTATTTATAGAGCAATAATATTACATTTATTACTTTAATCCAGAGTCATTTAATTCTATTTTTATATAGTAATTATACAAGAAGAGAGTGAAATATGATGTATTCAGTTAAAAGTGTTCAATATCACACGTTGGTAAATGCACTTAAAAATATTAGGTCAGCATATTCTAAATAGAGTGAGAGTAAAGTCTATCTTGTTTGATAGCTCTATCATGGTTGAATGTTTTGTGATCAATGCTTTCACTTACTGCATAGACATTAGAATGGGTGATTTAAGTGTGTGATGGTATTTTTGTTAAACCCTATTTTTACCCTTTTTTTGAGATGTATTGTAACTTGTTGATTTTATAGTAAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAACAGATATGCTATTTAAAAATCATCAGGTTAAAGTTAATATGTAACT # Right flank : TAGAAAGTTTTCCTTATTCTCCTAAACTATCAAGTATGCTGCCACACAGATAGCTTAGAGTATAATTATTCCTGTTTAGGGCAGGCACCATTCTATAAGTCAGTAAAGAATTGTAAATTCTTTTGATTTACATCTGTGATATTTTACTTGTGTAAAATTTATGCATAATATTTACCATAAATGAAATTAATTATTTAGGTAATTCTTAAATTATGGATAACAACTTTTCTCCGAGTGACCTTAAAACTATTTTGCATTCCAAACGTTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTTAATGGTGGCCGTGTGGAATATGTCACTGATGAAGGAAAGCAATCACTGTATTGGAATATCCCAATTGCAAATACCACCGTTATCATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTCGCTAAGGCGGGTGTTTTAGTCGGTTTTTGTGGCGGTGGTGGTACACCGCTATTTGCGGCTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 238828-236703 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQR01000001.1 Photorhabdus sp. CRCIA-P01 scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 238827 28 100.0 32 ............................ ACAATTAAGAAGCTAAAAAGTGCTGACTTTGG 238767 28 100.0 32 ............................ CATGTATACCAGAAAAATGCCAATATCAGTGC 238707 28 100.0 32 ............................ TCGTATTGATCACTTCACTACACGCACAAAAG 238647 28 100.0 32 ............................ TCAAGATCAAAATTTTCACATAATTTAACTAT 238587 28 100.0 32 ............................ GTTAGGCAGTCGCCAGGGCGAGATACGTCATA 238527 28 100.0 32 ............................ TTTTACCACGGCTGTTTTTATGAAGTTCCGCC 238467 28 100.0 32 ............................ AATAATACCCTCTCTCAACAATTGGTCTGTAC 238407 28 100.0 32 ............................ CCAATTTTTGGTTACGCCGTTGCAGTGAACAA 238347 28 100.0 31 ............................ GCTCACACTGTGCCAGTAGCTGACCGCGTTC 238288 28 100.0 32 ............................ ATGAGAGTTAAACTTCATACGACCTCTCGTAA 238228 28 100.0 32 ............................ GACAGGGACATTGATATCATCAGTTGTTGCTA 238168 28 100.0 31 ............................ TATATCAGGCTGCTTGTCCATGAGTTTCATA 238109 28 100.0 32 ............................ ATTATTAAAACTCACCCCGATTGATTTTAATT 238049 28 100.0 32 ............................ CAGTGTATTTCGCTCATTAATTGCTTTGCTAT 237989 28 100.0 32 ............................ AGGATAGTGGCCCCAACTTTCGAATAACTTCA 237929 28 100.0 32 ............................ ATAATATTTTTGTCATATTTAGCCCCGCTTGA 237869 28 100.0 32 ............................ CAATGCAGCCGTTGCTGAATTAAAATCACCCT 237809 28 100.0 32 ............................ CATTCCGACAGAGTGTCGTTATTGCGACGGCA 237749 28 100.0 32 ............................ AGCTTCTATCAACTGTATAGATTGTTGCGTCA 237689 28 100.0 32 ............................ TTTCTCTGTATCAATAACTGCTGTTGTGCCAC 237629 28 100.0 32 ............................ ATTTTGGACCACTGCGGGGCTTTGATATCACT 237569 28 100.0 32 ............................ GTTGTGCTCTTCAATCTGCGTCACTCACACAC 237509 28 100.0 33 ............................ CATGAATAAATCGTGTTCGCACTCACCCCCAGA 237448 28 100.0 32 ............................ TTCAAGTTGGCGCACCTGCACTTTGAGTAACT 237388 28 100.0 32 ............................ TTCCGTGGCTTATGGATTTAAGAATTGTAGTC 237328 28 100.0 32 ............................ ACTAATAGCGAGGTAATTATGAACGGGAAGCC 237268 28 100.0 31 ............................ CCTTTGGAATGCAAACTTACATGTTATTAAG 237209 28 100.0 32 ............................ TCAAAAACTATCGGCCATTGCCCGATCACCGC 237149 28 100.0 32 ............................ GTCCACATCAGGGTAGACCAGATGGTCAGCAT 237089 28 100.0 32 ............................ TACGAGTGCGGGTATCGTTCGGCATTCGGCGG 237029 28 100.0 32 ............................ AACTGCTCAATGCCGTCGCCGGCGTTTCCACG 236969 28 100.0 32 ............................ AGATTAACTGGAGGGAGACGCCGTTGTTTACT 236909 28 100.0 32 ............................ TTCGGGCACGGGTCGCCAATATATTTATTGCT 236849 28 100.0 31 ............................ GGATATCTTCCTGGGTATGCCGTTTGTCACG 236790 28 100.0 32 ............................ AATGCAACAATGTACGTCGATAAGCATACAAG 236730 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAATCAGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGGCTCGAAAAATAATATTTTCCAGCTTGTAATTATTTGGTTTTTAATCAGTGGATGAAGGGATCTTGGCACCAGTATCCAATACAAACTTAAGGTGTTGGGTGAGAAACGGTGCCCCGGTTCCAAGTGTTCAAATAATGTTTGAGCTGGATATTTAGTTGAGTGTACTTTTCTAGACTTCTTATAAAATCTATTTTTACAGTTATTACAATATTTTAAGGAAAATTTAGTTGTTCTTATAGCGGCTAAATTTTGCCGGAATCTACATTTTTATTGCTATAAGATATGGTGCTTTTGCTGTACCTCAGTTTTGACCCTTTTTTATCATCAAAAAATAACATATTGATTTAAAAGAAAAATAAAATATCTCCTGAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTGACAGTCAGCAACTTAAAGTTAATATGTAACA # Right flank : AACGGAAAATAGTGTTGTGGTTCAATAACTGCCTTAGGTTGTTTAGGTATAAATGGCGGTTAATTGCGCAGTTTTGGGGCCAATAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGTTCTGGATGTTCATCGGATGTTTCATAGGTTAATTGTGCTTCAGCCAGATAAGTGTGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTATTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCATCTCCAAAGAAGTCTTGTCTTGACATTGATATAAGGGTAGTAAGGTGAATTACAAGAGCAGTACCCGGTAGTTGAAGCCATTTTTTGCTTTAAGTTGCAAACGTGACTTCATGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //