Array 1 1102519-1103556 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSGP01000001.1 Enterocloster aldenensis strain AM40-2AC AM40-2AC.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1102519 33 100.0 34 ................................. TGCGGGAAGCGCGCTTTCATGGTAGGGTCATGCG 1102586 33 100.0 34 ................................. CTTAAAATCCGTTGCCATCTTTTCAACGGCACGT 1102653 33 100.0 34 ................................. TATATGGTCCCTTGCAAGTTTTACCGTACCGGTA 1102720 33 100.0 33 ................................. CCATGTATTATATCCGCGTTTGTGATTATTTTC 1102786 33 100.0 34 ................................. TGCTAACAATTTCTATTGCCTTTTCAATTTCCAT 1102853 33 100.0 34 ................................. CTTTGTCGGCAGCGCATATGTGTGTAGGCAACCG 1102920 33 100.0 33 ................................. TTATGGATACATAGAGCCTTGGTATGGTTATTT 1102986 33 100.0 33 ................................. TTCAGTGTCTTGCGGTAAGCCGCAGTACAGAAC 1103052 33 100.0 33 ................................. CTCCATATTGACTCTAACTAATTCCTGCTGCAT 1103118 33 100.0 34 ................................. TCTAAAACATCGATTTAGCTTACAAATTTTCTTG 1103185 33 100.0 35 ................................. ATTATCAATCATCTCTTGAGTTATCTGCTTCGTGC 1103253 33 100.0 35 ................................. TCAAACTCATTCGATGCCGGCTGCGGCACCTCCTA 1103321 33 100.0 34 ................................. CTCCCATATCTCCTGCAAGCACTTCACAATCTCA 1103388 33 100.0 35 ................................. CATGTAAGGCCGAACCAGATGACATGGTTCCCGCC 1103456 33 100.0 35 ................................. ATACCAGTCAAATTAATTAAGGCATAATCTGCTGC 1103524 33 84.8 0 ...............T.A......A.....TG. | ========== ====== ====== ====== ================================= =================================== ================== 16 33 99.0 34 GTCAGCCTCTGCGATGGGGCTGTGGATTGAAAT # Left flank : ATAGGCCCCGGGACACTTCTAAAAAGAAATCCTAAACCTTATTTGGCAAAGGCAGGGAATGCAGTTGTCTGTATATTTTTGAGATTGATTTTTATATGGTCATGGGAAAGCTTTTATCATTACCATATTAAGCGATTTCCCTAAAAAGTTATGTATAAATAATCAAACGTATGTTTAGCCCGTAATCATAAGCATGATAGACCATAGTGATTTTGATTTGTATCGGTTTATCATGGTTTTTGAGCATATGATATGTTATTAAGTGTAAGGACGATGGTGTTCATAGAAATTTATAGATAGCTTTGCTTTTTTGAACCAATATTACTTTGGTGCGGATGCCAAGTGCACATGAAAACTGTGAGAGATTCGCACCAGGTAATTTAATTAATGTTCTGATGGAAATGGGAATCAATAGGAGGATGACTTGTGTATAATAAGGGGATATGGTATAATTTAATAAAAAAAATAAGGAGTATGTGAAAAATATAGGTATATTTGCT # Right flank : TAGGATATGGTTAAACTGCGATATCTCATTATTGGGTTAGCCTCTGCCATGATACTATACCCGAAAATATAGCTATCCATGGGGGACTAACTACACGGTCCATAATCAAGCAAAACCACTACGGCATTGTCCCGGTGCAAAACTTAACTACAAATAGCCGTAATTAAGTTTCACTTAGATACAATCATTATTGTATGTATTGGATGTTTACAATAAGAATGCAGAAAGAGAGGAGGTCTGTGTTATTTATCTAGCGCACATAACGGAAGACAAAACAAAGGAGCAGGGCATCGCTGCACATCTTACCGAGACCGCCCAATTAGCAGGGGATTTTGCACAGGCATTTGCGTGCAGGGGATGGGGATATGGATGCGGATATCTTCATGATATTGGCAAGTATTCGGATAAGTTCCAGCAGCGCCTTCGCGGTGGAGCTATGACAGACCATGCCACAGCGGGAGCGCGGGAATTATATGACAGAAAGAATTACATTGGTGCAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCTCTGCGATGGGGCTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCAGCTTCCGCGAGGGGGCTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.10,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1112224-1113047 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSGP01000001.1 Enterocloster aldenensis strain AM40-2AC AM40-2AC.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1112224 32 100.0 34 ................................ GGTTGAACTAGAAGCGGATATCTCGTAAGGCCCG 1112290 32 100.0 34 ................................ ACCGCGGCCACGGCCTTCTTATCGTCACGTTTGG 1112356 32 100.0 34 ................................ CCCAGTATTCTATGCTAATATAGAGGCATGCAGA 1112422 32 100.0 34 ................................ GTTAACATAGCAAAACCTTTCCAGTTCGACCCGG 1112488 32 100.0 33 ................................ ACCACACTGACTAAATTCAACAATCCAGCATTG 1112553 32 100.0 36 ................................ GCCAAAATAATAGACGATTATTTCAACACTTATGGT 1112621 32 100.0 33 ................................ AACATTATAGTTGGCACTAGAAGCATCCGTTGT 1112686 32 100.0 34 ................................ AAGATTAAGAAGTTATCAGGTGAAACGAAAGCAG 1112752 32 100.0 33 ................................ AATCAAGGCCGCTTATAAGAACTGTGCATCCCT 1112817 32 100.0 33 ................................ AGGATGGTGCCTGTATCGTACCGGATGAGGTGG 1112882 32 100.0 35 ................................ TTGTTCCGGTCATATTCAAAGTTGGCTGCTTTTTC 1112949 32 100.0 35 ................................ CTACAAAATCAGCAGCCGTTCCAGAAGCCCCGAAG 1113016 32 90.6 0 ................C.....A....A.... | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.3 34 GTCACCACCTGCGTGGTGGTGTGGATTGAAAT # Left flank : TCTGACAATATGCTGGTGGGCTTTTACAATATAGAATCCACACTGAATGTCTATAATTTTGCTTTGAGATTAAGTACCTGCAAGATTCTGCTTGGGAGGGGGTGCACTGAAAGGAATCCAGATCATGGTATTTGGCATGGCGTTATTATCATTTGGCGGCCTGCTTGGTTGATTTTCTTTTTTGGCAGGAAGTGAGGGGCCAATTTGATTCCATTCCAGGTCAGTCAGTTTATTTTGTTATCAACGTAAAGAATCCTCCTTCTTTTTTTGAGTTTAAAATAGGGTGGTAAAACATATGTTTTGTATAACTTTTAATGTTCAGACACGCCAGTGCGAATGGGGAGTACCCATGAAAACCCTGGGAGGTTCGCACCTGGAGAATCAGGAATAGTTGGTGTTATTTGGATGGATTTGGTGCATGTGGAGGTAGCATGTGGTTGCAGTAAAAGATTTTTATGAAAATTGACGGATATAGGTATGAATAGCTGTGTAGATTTGCT # Right flank : TTGTTTCCTTGATGCTTACATATCCCCTGGTTATTGTAACCACCTAACGTTACTGAAACGGAAAAGATGTTACTTTTCTGCTACGATTATAAAAAGATTCTGCGTATTAAGCCATAGTGGGGCCTTTAATTATATTTATGTTTAATACTGTAACATGGCATACTAGAACTGATGGGATTGCAATTGATTGTATTATTGGGAACAGATTTACTGTCAGTTTAAATATTAGTGTAATCTTTGGAATACTTCGCACTGCCATGCTGTATTTTGGTGGTATATCAATTTATATCACCACGCTTATACAGAGAAAGAAAAGACAGTATAATAAATCAGACAAACCATAAAGAAGTACAATGTACGGAATCAACCCAAAAGAAGAAGTACGATATAGAACATGGATATTTGTCACAGAAATCACAATAGGTGAGTAAGGTTGAAAGGAAAATGCTTATTAAATCAACGAGTGTGTTTATATGCGCGTTTGCAATCATTTGATTTCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCACCTGCGTGGTGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 472618-471842 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSGP01000004.1 Enterocloster aldenensis strain AM40-2AC AM40-2AC.Scaf4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 472617 33 100.0 35 ................................. TATCCCCCACACACCATCCCGGCACATCATCCTGT 472549 33 100.0 34 ................................. ACGTTCTGGCGCCGAACCACATTGGCTGCCGCTA 472482 33 100.0 34 ................................. AAAATTAATGACCCCCAGGTCTTTGGCCTGATAT 472415 33 100.0 34 ................................. GTTTGCCTCCTTCACGGCCTCACGCCCGTCCTTC 472348 33 100.0 35 ................................. TGCCTGACCTGCTCCTTGTCATCATGCCTGCTGAT 472280 33 100.0 35 ................................. AGGTGTCTAAGCTGATATATCTTTCTGGGTACGCC 472212 33 100.0 33 ................................. TGATAAAGAGTGTATCATTAAGCCGCGTAGCCG 472146 33 100.0 35 ................................. ACAATCCGCAGCAACAAACTGCATAAAGAAATCAA 472078 33 100.0 34 ................................. ACAGCTGATACGCACAGCATTTGTGCCTTCACCA 472011 33 93.9 34 ................AT............... TTGTCCTTAAGTCCACCGGCAAAAACAATCACCA 471944 33 97.0 36 .................T............... CAAAATGAAGTCAAGGAAGGAAAGCGTGTCGTCACT 471875 33 90.9 0 ............A.........C.T........ | A [471847] ========== ====== ====== ====== ================================= ==================================== ================== 12 33 98.5 35 GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Left flank : ATACAGGATTTCAAAAGTGTGTTGGATGGGATTATCTGAATGGGGACAGGGTGGCTGGAAATCATGGGAATTGCGGGGGTATCAGTGTTTCAGCGTTTAGGGACATGGTGTGTATATCCGTTTTGATACAGAGAAAAAGGATTCTGTAAAATAGGGCGGGGTACCGGGGGGCAGATGCATAAAATAGACGGGAAGATGCTGGATTGACTTTTATTTTGTGAAAAAGTTTTATATAATATTATATAAGATGGAGTTATTGTTTTATTGGGGATGGAAGAGTTGGGGGGCGGACAGATGGCGGAAATGAATTTTCAAACAGACCCTAGGGGGAAATGATGGTGCGAATCATGAGCATACATAAAATTCCTAGGGGATTCGCACCTGAAAAGCAGGATGGAAGTCGGGGATTCCTTCCTTGAACTAGAGTTTGTTAGTTAAATATATATCCATTGTGTATGATTATGTCTGCTACAATGTTGTTTTTGTTGGAGGTTATTGCT # Right flank : ATTCCCGGTACCAGGATGTCCGGCAGGCAAAATCCGGTATCAGGGCAGCGGATGTGGGAAGTGGAGCAGAATAAGTATAGATGAAAGCTGGTATTCGCTTAGAACAATTGTAACAAACAGATATTAAAATAAAAGAACATGAAGTAAAATAAAAGGGCTGTAATTTCCCAAATTTTCCATTATAATTATTTCTATAGGAGTCAGGTATTGTGATGGACAGGTAATCACAATCGGCAACTGCAGGCAGATTGTTCCAAAGGAGAGGGGAATATGGGAAGAACGAGACAATTGGCAGCCATATGGATGGCAACTGGATTGGCAGTAATCATGTACGGCACAGCGGCGGCGGCTTCACGTACAGAGATTAATAGTGTATCCCTGTGGGTGGAATCTGATATTGAGGCAGGTGACAGTTCCAGTGATGTGGATGTGACCTCTGATTCCAGCAGATACACGGTGGATGATGTGGAAGTGACCAATGAGCCTAAGAATGAATGGGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGCCTGCGAGGGCTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //