Array 1 40306-41115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVNN010000014.1 Citrobacter koseri strain CB00087 CB00087_c0014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40306 28 100.0 32 ............................ GTCAGACCAGATACGACCACTTCTGGCCTACC 40366 28 100.0 33 ............................ AGTTGAAATAGCGCGTTTTACTATATCGTTAAT 40427 28 100.0 32 ............................ GACCGGGTGATCGGTGTCAAAGAAGTACTGGC 40487 28 100.0 32 ............................ AGCAGCGACGGATTCATGCCCAGCGGTTCGCC 40547 28 100.0 32 ............................ AGTAGCATGGTCGCGTAATAGTCGTCAATCTT 40607 28 100.0 32 ............................ TGGTCGTTGAATTGCCAGACCTCTACCGCCTC 40667 28 100.0 32 ............................ CTGGATAACCCCGGTCACGCCGATAACGTTGC 40727 28 100.0 32 ............................ TGAGTAAAAATATGCACCATATGCCATTAACC 40787 28 100.0 32 ............................ TGAAAATGTGTACTGGCCTGTGATTCCTGCTG 40847 28 100.0 32 ............................ AGGTGGTCGCCGAATCGAAAGGCTGTTCGTCT 40907 28 100.0 32 ............................ GAGGTGAACCTGCTGTTTCTCGGCCTGCTGTG 40967 28 96.4 33 ....................T....... TACAACCGCCGCAGTGTTTACGGCTGAATCTGT 41028 28 100.0 32 ............................ GCAAAGAGGCACTGAGTCATGAAAATCAGTCC 41088 28 85.7 0 ......................ACC.C. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATCAGAAAGGCGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTGACTGGCTGGCAGAGAAAGGCTATGACCGCGCGATGGGCGCACGTCCAATGACGCGCGTCGTCCAGGACAACCTGAAAAAACCGCTGGCAAACGAGCTGCTGTTCGGTTCGCTGGTTGGCGGCGGCCAGGTGACCGTTGCGCTGGATAAAGAGAAAAATGAGCTGACGTATGGTTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCTGCGCATTAATCTCGTAACCGGTAAAATCTGAACGCCAGTCGCGTTCAGATAAACTCGTTAAAATCCGTAATCTCTTTTGAGGTTACGGATTTTTTTGCCGTCATGCCCCGGATACCTGGAAACCCTTTTTTTGAGTGTTTTTTTAACGCTATGATTTTTATGTGTTTATATTAGGTGGCGATAAAAGGGTATTTAATCATTTCGTTGATATTTTTCTTTATTAACACCATGATAGCGACGAACTGCTTCA # Right flank : ACCACAAATGTAATTATTTATTTTGAAAGCTCTTTTGTTGATTTTTATCATTTCATCTGCCAGACCCTCATCAGTACTATCGATAACACATAAAATGACGGGGTTTAAATAGATATGTCTGCAAATTCAATTATGCCTTCGGATTTAAAAACCATTCTGCACTCTAAACGCGCCAATATATATTATCTTGAAAAGTGCCGTGTGCAGGTAAATGGTGGGCGAGTTGAATACATTACGAGTGCAGGTAATGAATCATATTACTGGAATATTCCTGTCGCGAATACTACGGCGGTGATGCTGGGTATGGGCACGTCAGTGTCACAGGCGGCGATGCGGGAGTTTGCAAGGGCTGGCGTGATGGTTGGCTTCTGTGGCACTGATGGTACGCCGCTTTATTCCGCAAATGAAGTTGATATTGATGTGTCATGGCTGTCACCGCAAAGTGAATATCGGCCGACTGAATATTTACAGCATTGGGTCTCTTTCTGGTTTAAAGAAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17890-17201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADVNN010000020.1 Citrobacter koseri strain CB00087 CB00087_c0020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17889 28 100.0 32 ............................ AGGCTACTCAGGACAAAGTGATGTCCGATTAC 17829 28 100.0 32 ............................ AGCGGCGTAGCGTACAAAGAGCGCCTGAACAT 17769 28 100.0 32 ............................ TGACTTTTCATTCCAAAAATACTCTACGACTT 17709 28 100.0 32 ............................ AGAAACGCCAAAAGCGGCGAGGTTACCCTGCG 17649 28 100.0 32 ............................ TTAGGACCGTGATATCCGTAGTGCCAGTAACG 17589 28 100.0 32 ............................ TCGAAGCGGATCGCCTCAACCGCATAAATAAC 17529 28 100.0 32 ............................ AGGAAGAAAAGCGTATGGAGCGCTACACCATT 17469 28 100.0 33 ............................ AGGTTTTTTGCCGTGGCCGCTGCACTGGCTAAT 17408 28 100.0 32 ............................ GGCAGGGGCAGGCAGCGACCTATATGACCGGT 17348 28 100.0 32 ............................ GACTTGCGACACCGGAAGAGCAGGCGGGTACT 17288 28 100.0 32 ............................ AACGCCGGAGCGGTAACAAGGGAGAAAAATGC 17228 28 85.7 0 ....................T.C..T.T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAACTGCATCACTGGCCCGGACTGAGCCTGGCTTCAGGTAAACATATCCACCGCTGGGAACTCTTTGGTCCGCAGGGCGCGCGCGCTGAAGTTCACTTTACACCGCGTTTGATCACCACAGACATGCTGGCGCTGCGTGAAGCGGCCGTTGCGAGCGTCGGCCTCGTTCAGTTACCTGTTTTAATGGTGAAAGACCAACTGGCTGCGGGGGAGTTGGTTGCCTTGCTGGAAGGATGGGAACCCAGAAGAGAGGTGATTCATGCGGTGTTTCCGTCCCGCCGTGGATTGTTGCCGTCCGTACGCGCGCTGGTGGATTTTTTGACAGAAGAGTATGCGCGGATGGTGGAGGATTAAAACAGAGCGCAATATACCCTTTTTTATTTTATGTTACTAACCTATTGATTTTATTGTATATATATAACTTGGGTGAAAAAGGGTCTGACAGGAAGAAGTTGCGTTTTTCTTCAATAAATCAACGTGATTGTCTGATATTATTCCT # Right flank : TTAATGTAGAAGGAAGGGACGCTGCGGGGAATAAAAATAACGTTAATTCGCATCAACGGTATTCATGCAGGAAAGGGACAACAAAAAGGCCGGATAAACCGACCTTTTTTTATCTTTACGCCACCCGGGCGTGAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAATTCTACGCGGAACATGGTATTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTTTAAATAAGTAAAGATTTGCGCGTTTAAAACGCAGCAAATCAGGTTTGGCGCATTACTCCGAAAAACACGGCAAAGCCGCACT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //