Array 1 288906-289127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCP010000003.1 Clostridium botulinum strain ChCh9A-KM62-1 3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 288906 28 100.0 36 ............................ GTTGATGAAACAAATATCGAAGATGAATATATTTAT 288970 28 100.0 36 ............................ ATAATTTTATCATAGAAAATGTAATTCTATTTGAAT 289034 28 96.4 38 ........................T... AACAATAGAGGGGCTAAGTTCCTGGTGTGAAGCAAAAT 289100 28 92.9 0 ............C......A........ | ========== ====== ====== ====== ============================ ====================================== ================== 4 28 97.3 37 TTAAATACATCTTATGTTACTGTTCAAC # Left flank : TTATTATACCTGTAAATATAAAATTTTTCTTCTTCCTAGTTAGTTCTTTTAAGTCTTTTTTGTTCTTTAAAAAATAACCTCCCACTACAATTGCTGAAAAAATAGTTGCCCATCCCGTAAATCTAGGGAAGCTTCCCATTAACACCATATACATTACCACTAATAAGGCTACATGAGATTTTTTCATATTACGAAATTTATCCACAATACTCCCTCCATATTTTTATAATATATTTCCTACACAAATATTCTTCTACAGAATTATGGATAATCCTTCAAAAATATAAAATAATATACAATATCTACATAATTACAAAAAACTATTTTATCTATCCCCTTTAAATACTAAAAACCTGTCCTAAAAATAGACAGGTTTTTAAAATTAATCTAATAATTTACATATAAATTATCACAATGCATAGTTTAGTTTTATAAAAATCCCTATGCCATTCTCTAAGGAGTAAGCGATTCACACCAAATCGTAGACTTGGGTTCTCTGC # Right flank : CCATAGTAAAATAGCCATTCCTTATTTTTAAGAATAGCATATAGCCATTGATTTTACAAGGTTCTATAGAAAGTTTTCCAAGTGATTACGTTTTTTAATAAATACATAAAACAAACCTATTCTAAGCCTTATATACCAATAGCTAGAATAGGTTTTAAAATTTGTTACGCGTGGAAAAATTCAATTTATGAAACTCTTTATCCTACTCTCCAAGGAGTAAGCGACTCACACCAAATCTAAGATTTGGGTTCCCTGCTTAAGTACTATATTATTGATATGAAATGAACCATTCCTCCAGATAATAATGCTACTATAGCGCCTATTATAGTTCCAATACCAGCCCCTTTTACATGATGCCATGGATTTCTATATTCTTTATCCATATCCTCTGTACCAGGTATTCTAGTTTTTTTACTATGACAAAAAAGACCTATATCTAGAACAATCATATCATAAATGTTTACTACAAAAAACAAAGTAAATACATAAATGTAGGCTTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAATACATCTTATGTTACTGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 302899-302344 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCP010000003.1 Clostridium botulinum strain ChCh9A-KM62-1 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 302898 30 100.0 36 .............................. TTAAATCGATCAGTAATTAATATGTTTTTATCTCTT 302832 30 100.0 35 .............................. CGTTTTTTTGTTGCAGGTTTTATTAAAAGTAATAG 302767 30 100.0 36 .............................. AAGATAAGGCTTTCTGTACCCGTATTAAAATAAGTC 302701 30 100.0 34 .............................. GAGGGAGATAAATATGACAGGAAGGTATGAAATA 302637 30 100.0 36 .............................. ATAATAAAAAGAAATAGTTATATATATATTGGACAT 302571 30 96.7 37 ..........G................... TTGTTTTTATAATCTGGTTCCCAATATTTAAAAGAAA 302504 30 100.0 36 .............................. TTTCTAAAAGTTTTAGTATTAAACCTTTTTTCTTTT 302438 30 96.7 35 ...G.......................... TTATGATATGATTTTATTTGTTTAAGAGTATCTGC 302373 30 96.7 0 ...G.......................... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.9 36 GTTAAACATTAACATGAGATGTATTTAAAT # Left flank : GAATATTTATGGTGTCAGATATTGTGCGTCCATTATGTAGTTTTTCCAGGTAAATTAAAAAATAAAAGTAATGTAAACTCAATCATATTAGTGGTTTATATAGGATTTTTTATAGAAATTTCTATTTTATAAAATCATCTGGAAAGCTTTCTGGAAAATCTTGATATTTCAATGGGGGTGTGCTATTTTTAATTTTAAGGAATATTGATTTTACAGTGGTTGAACCTTAACATAGGATGTATTTAAGCAGGGAACTCAAATTTACAATTTGGTGTGAGTCACTTACTCCTTGGAGAATAAGAGAAGGAGTTTTATAAATTGAATCTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGTCGTTGATATATAAGGCTCAGGATAGGTTTTATTTTATATTTATTAAAAAACGTAATCACTTGGAAACCTTTCTATAAAACCTTGCAAAATCAATGGTTGTATGATATTCTTAAAAACAAGGAATGGCTATTTTACTATG # Right flank : ACTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTCTTTTTGGGTTGTTGACTTGTTAGTCTAAAGCTACACCATAAGAAGGTTCATTAACACATGTGGAAGAACAGGTAATAGATACAGCGCTTGCTATTGATATGGTGAATTGTATTACAAATAACGAAGGTTTTATTTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTTCTAAGTTGTATCATAACCTAAGTAAATTATAAGAATATATGGTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGACGTCTTAGATTTTTTATTGCATGAGATTGTACGGAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACTTACAATGATAAAGTAGGTCCTGATTTTTATTAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACATTAACATGAGATGTATTTAAAT # Alternate repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 305928-305636 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCP010000003.1 Clostridium botulinum strain ChCh9A-KM62-1 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 305927 30 100.0 36 .............................. TCCTCCATATCTCACATATCCTTTCTAAAACATTTC 305861 30 100.0 34 .............................. GTTCTGATTTCAAATTTATTTACTATCCTTTCTA 305797 30 100.0 36 .............................. AAAGTAAGTTTACTCTAGGTTGTCGAACTGTTCCCA 305731 30 100.0 36 .............................. TACATTTTCATAAATCCAGTTGCCACTTTATTAACA 305665 30 96.7 0 ......T....................... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 99.3 36 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : GCATGGCATCAATTTTATCATAGGCATAGGTTAATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTGTAGCGTCTTCCTAAAATAGGTTCTGTATTAGTTACTCCATCTCTAAATTCCACTGAAAGTTTTTCAGGGTTCAATTTGCTCATTTAATCCCTTCCTGTACAATATTTCTCATAGGACTATTATACGATTAGGTTAAGGAAGTTGTCATTTAGGTAGCTATAAAATCTATTATAATATCATTAGCGCTATATAAATTTATAAAAAGAATATTGAAATAAATAAAAGAAAAGAACAAAAACTTTTTCCAATCGACTTTAAGTTGAAAATTTATCGAAATCATTGATATATAAGGGTTTAGGTTAGGTTTTTTATGTAAATTTGAAAATACCCTAATCAGTTGGAAATTTTTATTTATAACCTTGTAAAGTCAATGGTTCTATGATATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : TCATATTCCCATTCATCTTTGCAATCTTTTCTCTTAGTTGAACATTAATATAGATGAAAAGCCACCCTTAATAATTAAATATATGGGTGGCATAGTTGTATTTAATTTATATACGAAACGATTGTAAATAGTTTTGTATGTCTTCTTCAGAAGTATTGAGCAAATCAGTAAGCATCCTTTGAATAGAGTGCAGGGTTTTAATTCTCTCTTCAATTTCGCAGATTTTATTCTTTACCAATCCTTTTAAATTCTCTCCATCCATTTCTTGGCTGAGCATTTTCAGTATTTCTTTGATTTCTTTTAACGAATATCCTAATGATTTAGCATCTTTGATGAATTTAATTTTCACAAGATAATCATCTGTGTAGATTCGATAACCATTGGCTATCCGCTTTGGGGCAGGCAAGATGCCACTATCTTCATAGTAGCGTATAGTTGATGTACTTATCCCAGTTTGCCTTGCTAGTTCACCGCGTGTCATTTTGTTCACTTATATTACC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //