Array 1 97314-95123 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTMZ01000018.1 Sphaerotilus natans strain ATCC 13338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 97313 28 89.3 32 A..C.A...................... AAGGTCGAGACCACGACGGGAACCGATGCCGC TC,C [97301,97306] 97250 28 96.4 32 A........................... AACCAGGCCCGCAGCACCAGCAGCGAGGACGG 97190 28 100.0 32 ............................ AGTGCCAGGCGCGCCGGGACACGGGACGGAAT 97130 28 100.0 32 ............................ TGAGCCCAGCCGCGCCAGGGCAGCGCCCGGCC 97070 28 100.0 32 ............................ AACCGTCATGACGAGCGAAGCCGCATCGAACT 97010 28 100.0 32 ............................ TCGAAGGCCGTGAACAGCAGGCCGCCAGCCGC 96950 28 100.0 32 ............................ TCACAGCTGCACGAGGCGGAACTCGTCATTGC 96890 28 100.0 32 ............................ TTGAAGCCCCAGGCCAGGTGCAGCTCCCACTT 96830 28 100.0 32 ............................ GGCCACCGTGGCCGGTCCTGCTCGGGCCTCAG 96770 28 100.0 32 ............................ AGCCCTCACCCTGAGCCCCCAGGGCACCAGCC 96710 28 100.0 32 ............................ ATGCGCAAAATCGAAGCCCGAATGATCGAAGC 96650 28 100.0 32 ............................ CTTGGCAATACCGTCGTGACCTGCCGGGTCCG 96590 28 96.4 32 .........T.................. TTACTTGGTGAGAACGTGACAGTAATCACCGG 96530 28 100.0 32 ............................ ACCTGAGCCCCCAGCGCCAGGGCAGCGCCCGG 96470 28 100.0 32 ............................ TTGGGAGACGCACGCGCCGGCCGACGACGAGC 96410 28 100.0 32 ............................ GCTGCCCCGCAGCCGCCCGCAGCGGTCATCGG 96350 28 100.0 32 ............................ ATTCGAGCTGTCCGGCCTCGTCAGTGCTGATG 96290 28 100.0 32 ............................ TCAGGCCGGGTCGACGGTCTGCAGCCATCACC 96230 28 100.0 32 ............................ GAGACGCTGCAGCCGATCGGCTCGCCGCTGCT 96170 28 100.0 32 ............................ ACACCTCGATCAGATCCATGCTCTGCGTCCCG 96110 28 100.0 32 ............................ AAGGTGGCCAAGCACCGGTTGGCGTTCGACCT 96050 28 100.0 32 ............................ ATGCGGCATAGACCAAGCGCGATTTAGGGCTG 95990 28 100.0 32 ............................ GTTGCCGCGCGTGATGCGGCCCCAGGTCACAT 95930 28 100.0 32 ............................ ATTCGGCGGTGATGCCGGTCAGGTCGAGGGCC 95870 28 100.0 32 ............................ AGGCGCCGGCCGGGATCAGCCAGTCGTCGACC 95810 28 100.0 32 ............................ GACCTGTGCAGTCGGGCCGACTTCTCGAGCGA 95750 28 100.0 32 ............................ AGCTCGGTCGCCGTCAGCTCGCCGTCCGCCAG 95690 28 100.0 32 ............................ TTTGTGCCCAGCGCGCCGGCATTGCTCATGAT 95630 28 100.0 32 ............................ TGCTGATCACCAAAGACGACATCGACTTTGCC 95570 28 100.0 32 ............................ TGGCCGGCGAGATGCCGCGGGGCCGTGTGACC 95510 28 100.0 32 ............................ TACACCTGGGACGACCCCAGCGACATCGAGAC 95450 28 100.0 32 ............................ ACCCACACGCTACGGCAACCTCCTCTTCCGTC 95390 28 100.0 32 ............................ TCTGCCGACCTGCCTCCCGCCGTCCTTGATGC 95330 28 100.0 32 ............................ ATCCCCTGGCAGATCAGCCGCGCGGTGCTGGC 95270 28 100.0 32 ............................ CGGCAGCTCGCCGAGCAGCCGATCCAGCTCGG 95210 28 100.0 32 ............................ GGGGGATGAAGGAGCGAAGCGGAGACATCCCC 95150 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 37 28 99.5 32 GTGAACTGCCGGGTAGGCAGCTCAGAAA # Left flank : GTTACTACATCAGCTCCGAGGTGCTCGACGCCCAGGCCTTCAACGCCACCATCCGGGCGCACTGGGCCATCGAGAACGACTGCCACTGGGTGCTGGACGTCAACTACCGCGAGGATGCCTGCCTGATCCGGCGCGACCACGGCCCGCACAACATGGCCACGCTGCGGCGCATCGCCCAGAACCAGATCAAGCTCGACGCCGGCAAGGGCAGCCAGAAGACCAAGCGCAAGCGCATGGGCTGGAGCGATGACTACCTCCAGGCGCTCTTCGGCTTGACTCCAGCCTCACTCAGCCCTGCACAAATTTCGAGCGATGGCT # Right flank : GTGCGAAACCGCACCGCCTATTCGATCGCTGGAGCGACCTGGCGCCCCGATCAGAGATCGGCGTCCGCCGACTCCAGCATTCTCTGGCTCTGCTGGGCCAGGGGCTTGGTGGCCCAGGCCCAGGCCGAGGCCACGCCCTCGCGGCGGACGCAGGCCCGGACCTGGGCGCGCAGCTCGCGGCGCGGGCCGCGAATCCGCTCGACGGTGCAGCGGCCGGTGACCGCCTCGACGATGTGCATGTCGACTTTCATGGAGTCCTTGGAGTTGTGGCTGGCCCCGGATGGCGGGCCGGCTGGGTGGGTAGGCTTCGCATCATGCCAGCCCGGCGTCCGCCGCCTGACAGGCGGCCCACTCAGCCGCGCATCAGGAAGGCCACCGTCATCGCCAGACCGGTCAGCACCACGCCGGTGCGCACCCAGGCGGCCGGAAGCCGTCGCGCCAGCCGCGCGCCGATGAAGCCGCCCAGCGTGGCGGCCACCATCATCACCAGCGCCTGCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGGGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 49721-48449 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTMZ01000025.1 Sphaerotilus natans strain ATCC 13338, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 49720 37 100.0 36 ..................................... ACGGACATCAGCTATGAGGTGCAGATGCAGCGACTG 49647 37 100.0 34 ..................................... CTGCGTCCACGTCAGTATCATCGTAGATCATGCG 49576 37 100.0 35 ..................................... CGGTCGTCGTCCATCGCGGCCTGCTGGACGCCGTA 49504 37 100.0 37 ..................................... GCCGCCTTGTACTCCGCCGCAGTCGTGCCGAAATCAG 49430 37 100.0 34 ..................................... GGCACTGGCGGCCGAGTACGGTTGGCATGGGGCG 49359 37 100.0 36 ..................................... TTCGGCACCAGCTCGAAGACCTCTCGCACCGATCTG 49286 37 100.0 34 ..................................... TTGCTCATCGCGTCACCCCCTTGAAGTACCGGCA 49215 37 97.3 36 .T................................... CCGATCCGCGACATGCACAAGGCCACGCGCTGGGAG 49142 37 97.3 39 ..................G.................. GTTGACGATGCTGGACACGTCATCGATCGCGCCGCGGTC 49066 37 94.6 34 ..................G.....A............ GGCGTCAGGTTGACAGATACCTTAATAAGCCGAG 48995 37 100.0 36 ..................................... GCCTTGTCCTCTCCGCGCTTGGCGTACTTCCGATGC 48922 37 100.0 37 ..................................... ACGGTCTGCGGCCGGGTCGTGATGCTCAGGCCCTGGG 48848 36 94.6 38 .................-..........A........ AGAAGCTCCAGGAAAGCGAGGGTGGTTCCCGTGATCGC 48774 37 94.6 35 .................A..............A.... ACGCCTGCCGTGTCGCTCGCCCACTGTGCAAGGCC 48702 37 97.3 36 ............A........................ AATGTCATCATGATCATATAACTCGCCGATGATGTA 48629 37 100.0 35 ..................................... ACGGCATACGCCTGGGTCACGGCGTCCATGCGCTC 48557 37 100.0 35 ..................................... TCACTTGTCTAGAAAGATTTGTGATCGATGGGTGT 48485 37 83.8 0 ................GA...C...........GCC. | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 97.7 36 GGCGATATTCCCGGCGAGAGCTGGGTTGGATTGAAAC # Left flank : TGCTGCGTGGCTGGTTGCGACCGTCACGCTGCTGGAGCAGCGTGCAACCGGTCATCCTGCCGGGCATGGACAGCGGTCAGGCGCGGCGCACGCGCAAGCTGATCCTGCGGGCGCTGACCCATGCCGGCCTGGATCCCGACCTGGTCGAACAGATCGATTTTGGCCAGACCGGCTTCCTGCCCGAGTCGATCGATTACCGCTCCTTGTTCCTGAAGGATCGAGCAAGCTGGCGGCGCATGCCGGCGGTGCATGTACGCTTGCGCTTGCGCGCCCCTGTCATCGGCCCCATCGTGCTGGGCCAGGGGCGCAACGCCGGCGTCGGCACGCTGGTGCCGTGCGCGAACCCCGAGTGACGGCCGCCACCCGCGAGGTTCGCGCCAAGCCGCATCAAGCACTTGCCGACGCTCCGCACCTTCCCTCGACGTTTTTTCGCTGATAGCATCCCGGTTCGCGCAAAAAATGAAAAATACATCGGAAAATCAATGACTTGGCGCGGCGGA # Right flank : TCAAAAACTCAAAGTTACAAAAGATAACAGTGGCTTACTGATGCGCCATTACCATCCAGTTCCGGAATAAACCACGAACAAAGATGTCGGGAGAAGGCTGGGCATGGCGGAAAACCTCAACGATGAGGCGCTGCGGCGCGAGGTTCGGGCGGAGCTGAGTCGTGTCGAGGAGGATGCGACCTACACCAGCAAGGCGCATTTCGAGGCTGCGGATCGCTGGTCGGGCGTGCATCTGTGGGTGGGCATCGCGTCGGCGCTGATGGCGGCGCTGGCCGGCGCGTCGGCCTGGAAGAACCAGCCTGAGATCGCCTCGACCCTGGCGCTGATCTCGGGCGCGCTGACGGCCCTGTTGACCTTCCTCAATCCCCAGTCCCGTCATGCCGCCCATCAGCAGGCCGGCGCGCGCTTCGTTGCGCTGCGCAACGAGGCCCGACTGATGCGCCAGGTCGAGCTGCTTGCCACCGCATCGGCGGCGCTGCCGGACCTGGTCACTCGGCTCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGATATTCCCGGCGAGAGCTGGGTTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 85370-86476 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTMZ01000021.1 Sphaerotilus natans strain ATCC 13338, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85370 28 100.0 32 ............................ ACTGGGCCCAGGCCGGCAACAGCGCAGTGCTA 85430 28 100.0 32 ............................ CTCGTCGATCACGCAGCGCTGCCGGATGTCCT 85490 28 100.0 32 ............................ TTCATGCGGGTTGATGCTTGCCAGCATCCCGA 85550 28 100.0 32 ............................ ATGCCCCGCTGGCAGGCCGGCCTTGTCTGGCT 85610 28 100.0 32 ............................ AGCAACGCGCCGCGGCAGCGGATGCCACGCCT 85670 28 100.0 32 ............................ AGCGTCCGGCGTTGAAGTCGATCACCGACTCG 85730 28 100.0 32 ............................ AATCAGCGCCTCGTAAGCCACCGGCTCTTCGT 85790 28 100.0 32 ............................ ACCATGCCCGGTGCGGTGGTTGTAGTAGCTGT 85850 28 100.0 32 ............................ AGTGCCGGGCGCGCGGCGCGCCCCCTCAATTC 85910 28 100.0 32 ............................ AGATCGCGCCTGAACTGAAGCAGTCCCTCAAC 85970 28 100.0 32 ............................ CCTCGGCCTCTCGGCCTTGTTCGCGCAGCGCC 86030 28 100.0 32 ............................ AAGTGGTCCTGTTGAGAGAAACGCGCGTGAAA 86090 28 100.0 32 ............................ ACTACCCTAGGAACTACCATCATGCAAGCCAT 86150 28 100.0 32 ............................ CCCTGAGCCCCCAGCGCCAGGGCAGCGCCCGG 86210 28 100.0 32 ............................ ATGTTGTAACGGTTGTCGTACTCGCGCTTCCA 86270 28 100.0 32 ............................ CGCCAGGATCGCGACGTGCTCGGGCTGCACGA 86330 28 100.0 32 ............................ GCCAGCGCCGCGATCACGGCGCTCGACTTGCT 86390 28 100.0 32 ............................ ATCGGGAGGGGTTGCCGGAGACGCTGACCCAA 86450 27 85.7 0 .....................-...GGC | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.2 32 GTGAACTGCCGGGTAGGCAGCTCAGAAA # Left flank : CTGGCCATGCTGATGGACACGGCGTGGCTGCGGGGCATGCGCGATCACCTGACGATCGGCGACATCGCTGCCGTGCCGGCACAGGCTCGGCATTGCTGCGTGTCGCGACGGCAATCCCACAGCAGCCCGGAGCGCATGCGCCGCCGGCTGATGCGGCGTCAGCAGATCGACGAGGCCACCGCGCGCGAGCGCATCCCCGATCAGGTCGCAGCCTTCCTGAAGCTGCCGAGCCTGCAACTGCGCAGCAGCAGCACGGGCCAGCACTTCCGGCTGTTCATCCAGCACGGCCCGCCGCAAGACGCTCCGGTGCCCGGCGCCTTCAACGCCTACGGTCTCAGCGCCACGGCCACCGTGCCCTGGTTCTGACGACCCTTTTTCGGGGCGGCGGCCTCCGCTCCTTAAAAATCAAGCACTTAGCGCAGGCCCCCGAAAGAGGGTCTCGCGCCAGGATCTGGCAGAATGTCCAAGCGCGACAAGCACTTGGGTGTCTGCCAGCTCTA # Right flank : GATTGCATTAGCCACCACCCCGATTGAGTGGTAACAATCCAGCCCGACCTCGCAGCCCAAGACACGATGCAAGACCACCCGACGGCCCCCGGCGATGAGCTGATGCAGCACTTTGAAGACCTGGCCGATCCGCGCCGGCAGACCGGCCGCTTCCAGTACCCGCTGCAGGAACTGCTGCTGACGGCGCTGTGCGCGGTGGCCGCGGGCGCCGAGGACTGGGTCGATGTCAGCGAGTGGGGCGAGTTCAAGCTGGAGTGGCTGCGGCGCTTCCTGCCCTTCGAGCAGGGCATCGCCTCGCACGACACGTTCAGCCGGGTGTTCGCCCTGCTGGACTCGGTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGGGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //