Array 1 163439-161152 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNA01000029.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015013 scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163438 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163377 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163316 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163255 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163194 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163133 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163072 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163011 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162950 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162889 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162828 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162767 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162706 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162645 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162584 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162523 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162462 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162401 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162340 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162279 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162218 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162157 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162096 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162035 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161974 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161913 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161852 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161791 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161730 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161669 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161608 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161547 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161486 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161425 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161364 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161303 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161242 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161181 29 93.1 0 A...........T................ | A [161154] ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181561-179946 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNA01000029.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015013 scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181560 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181499 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181438 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181377 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181316 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181255 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181194 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181133 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181072 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181011 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180950 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180889 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180828 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180767 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180706 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180645 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180584 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180523 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180462 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180400 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180339 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180278 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180217 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180156 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180095 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180034 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179973 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //