Array 1 281573-282313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENVJ010000002.1 Listeria monocytogenes strain MF8025 MF8025_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 281573 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 281638 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 281703 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 281767 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 281833 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 281897 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 281960 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 282024 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 282089 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 282153 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 282219 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [282242] 282285 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTTGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 7870-5786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENVJ010000003.1 Listeria monocytogenes strain MF8025 MF8025_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7869 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 7803 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 7737 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 7671 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 7605 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 7538 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 7472 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 7406 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 7340 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 7274 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 7208 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 7142 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 7076 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 7010 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 6944 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 6878 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 6812 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 6746 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 6680 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 6614 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 6548 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 6482 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 6415 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 6349 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 6283 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 6217 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 6151 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 6085 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 6019 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 5953 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 5887 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 5821 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //