Array 1 32445-34999 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHH01000030.1 Moraxella catarrhalis strain Z18 B750ctg16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32445 28 100.0 32 ............................ TTTCCAAAAAATAACTACTATTTAATATATGA 32505 28 100.0 32 ............................ GCTGATACCAATCAAGCATTAGCCACCGCCCA 32565 28 100.0 32 ............................ CCATGGCACTTCAGTGTTTAGCACGCCAAAAT 32625 28 100.0 32 ............................ AAATCCCAATAACTTAAGCCTGCACCGTTATA 32685 28 100.0 33 ............................ CTGCCCCATGAGTGCCAAAGTCTCGCTGGCTTT 32746 28 100.0 32 ............................ ACCGCAAAATTATAAACCGCACGAAATACACG 32806 28 100.0 32 ............................ ATCAAGGCAGATGATAAATATTGCTGCTAAGA 32866 28 100.0 32 ............................ TTCTTTGGCTTGTACACCTTTAGCATCTAACG 32926 28 100.0 32 ............................ ATCTATATAATCTACAATGACTTTACCCGTGT 32986 28 100.0 33 ............................ AATTCGTTGCAAAGATTATTTTTGCAATCTTTT 33047 28 100.0 32 ............................ CTGCTCAATTTATCGCTAAGATTGTTTTGCAA 33107 28 100.0 32 ............................ TTTATATTCGTAGAAATTTTATTTGTAAATAT 33167 28 100.0 32 ............................ TCAAAATGTTTATGAACACTAGCCTCATAAAC 33227 28 100.0 32 ............................ AGTTCGGTAGATGTGCAAGCGACCAATGGGCG 33287 28 100.0 32 ............................ CCAAAAAGGGGCGGTTTTATTGCTTGGTGTGT 33347 28 100.0 32 ............................ ATGTTAGCTACTCACAATCCAAAACTTACTAA 33407 28 100.0 32 ............................ TATCAACGCCCCTAAGGGTAGGGGTAGGCAAG 33467 28 100.0 32 ............................ AAAATCTTTCTCAATTTTTTCAATATCTAACA 33527 28 100.0 32 ............................ TATCAACAAGTTTTTAAAAGCATTGATAAAGT 33587 28 100.0 33 ............................ TTTCATTATCGTACTCTTTCCCAAAATCTTTCT 33648 28 100.0 32 ............................ AGGGTAAATTAAACACCATCAAAAAGCCAATC 33708 28 100.0 31 ............................ TATATAAGCACAAAAAAATCTGCGGGCGGAT 33767 28 100.0 32 ............................ ATGCAACACGCATCTCTGCTTGATATGCCAAC 33827 28 100.0 32 ............................ TAGAACAAACCCTTGAACAAAGGAAAAATACC 33887 28 100.0 33 ............................ AAGCAATGTATCGCCTACCTGTGTGTTGCTCAA 33948 28 100.0 31 ............................ GTCTATGCCGTGAATTCCACCTAAAAAAACG 34007 28 100.0 32 ............................ GTGTGAAAGATTTGGCAGAATTTTTAACTACT 34067 28 100.0 32 ............................ ATACGCAATACTAGAAAACTATAGCGAGGTAT 34127 28 100.0 32 ............................ TATTTTGTTTGGTTTTGTTTGTAGGCATGGCA 34187 28 100.0 33 ............................ CATCTTATCACATAGCTATAACCTACGGTATTT 34248 28 100.0 32 ............................ CAATTGGCAAGCCGTGAGCTTGCTCAAATCCC 34308 28 100.0 32 ............................ GTACTCTCTTTGTTGCTTAGTGTGTATTATAA 34368 28 100.0 33 ............................ TGTTGGTAATAAACGATGACCGTTTTTACTGTA 34429 28 100.0 32 ............................ ATGAAAGCACTCGGTACACACCGTCCAAACTA 34489 28 100.0 33 ............................ TGTAGGTATGGTTATACCGTTGATCGTGGTTGG 34550 28 100.0 33 ............................ AATCAACAAAGAGAGTACATTATGAAAAATTCA 34611 28 100.0 33 ............................ TGCCTGACCTTGCAGATGCCGATGGCGATTTGT 34672 28 100.0 32 ............................ TTCAATACGCTCAAAGCGTGTGTTCTCTGCAC 34732 28 100.0 32 ............................ TATTAAACGCTTTAAAATCAATTCATGCTATC 34792 28 100.0 32 ............................ ATAGCTTGGGGTCTAGCAGGCGACTATGGTTT 34852 28 100.0 32 ............................ AAACCGAAAGAAAAAGTTTATCGACTTTATGA 34912 28 100.0 32 ............................ ATATGTAAATCAAGGAAATTCTACTATTACCC 34972 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 43 28 100.0 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GTGCCTGTGCCAAGTAAAATTACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGATATAAGATACGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAATGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATGATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGCAAAATAACGGATTGACCCTTTATTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATTCAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGGCTTGTTATTTCTTATTATTTTGGTTTATAATAACT # Right flank : TTGCAGGGCAAGGCGTTAAAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7-2334 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHH01000029.1 Moraxella catarrhalis strain Z18 B750ctg9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 7 28 100.0 33 ............................ TTGCAGGGCAAGGCGTTAAAGTACTATCAACAA 68 28 100.0 33 ............................ AAGCCGTGAGCTTGCTCAAAGCCACGCTGTTGT 129 28 100.0 33 ............................ ATAACAGCGTATATAATAATCTTTGTTGTTTTC 190 28 100.0 32 ............................ TAAATTGTGGTCGCCATAACATCTCACATAAT 250 28 100.0 32 ............................ GACCAAAAGATCAAAGGGCTTAAAGCTAAAGA 310 28 100.0 32 ............................ GTTTAGAAGCTTACTTAACATACAAGGGCTAT 370 28 100.0 33 ............................ TAATTAAATTCCCAAAGCCTTGCACAATTACAC 431 28 100.0 32 ............................ TCTGTATAAATGAACATATTCCCCTACATTTT 491 28 100.0 32 ............................ TTCAGCAACATCATATTCAGCACTACGACGAT 551 28 100.0 33 ............................ ATAGCCGACCAAGTGAGTTTGATAGAACTTTTA 612 28 100.0 32 ............................ GTGAGCTTGCTCAAATCCCCTGCTTTGTAACT 672 28 100.0 33 ............................ ATTAGGGAATGAGTCGCAGGGCGTAATCAAAAA 733 28 100.0 31 ............................ AAAACCCTGTGATGATTGGCGTTGAACAAAT 792 28 100.0 32 ............................ GTATTTTGTAGTTGAATATAAACGCCATCATC 852 28 100.0 32 ............................ AATGGCTCAAGCCTGCATGGTCATAATATACG 912 28 100.0 32 ............................ GCACTGGTTTCATGGCGTATAACTCAAACTCA 972 28 100.0 32 ............................ AAAACAAGCGTTATAATAAACGCACAAATTAA 1032 28 100.0 32 ............................ AACGATATAAATATTACATTGATATAATATTT 1092 28 100.0 32 ............................ ATTAGCATGTAGTTACTACCGCTATTATACAA 1152 28 100.0 32 ............................ AGAGCAACACGCCATTTTTTAAGTGGCTTACA 1212 28 100.0 32 ............................ ATAGCAGTATATCCGAATCAATAACAGTATAT 1272 28 100.0 33 ............................ AGTAAATCAAGAAAAGTAGTCGAGAAAATACTT 1333 28 100.0 32 ............................ AACTCAGGCAAGGCTCAAATGCACAAGCTTGG 1393 28 100.0 32 ............................ AACAAATATCATTGCCCCAAGCCGTGAAAAAC 1453 28 100.0 30 ............................ CCACACTTCCCACCCTGATTATAAAAAGCC 1511 28 100.0 32 ............................ ATGACAGAGAACGGTTAAGTACAACGGCAATC 1571 28 100.0 32 ............................ TTGATACACAAAACATGTCTATTGTACTTTCT 1631 28 100.0 32 ............................ TTTCGCAATAAGTTTGGCGAATATATCTCACT 1691 28 100.0 32 ............................ AAATCAAGCCGGTGGTGTTGATTTAGTGAGCA 1751 28 100.0 32 ............................ AGCGATTGAAAGTAATATTAATAGCTTTAATA 1811 28 100.0 48 ............................ ACAATCAACGCCTAGCATTGGTTGATGAGTTTACCAAATTGGTTGCAA 1887 28 96.4 32 .............T.............. TTTGGTGATTACAAGCTACCGTCCGAATTTCG 1947 28 96.4 32 .............T.............. AACTCGGCAGCAATACCGCCAAGACATGTAGG 2007 28 96.4 32 .............T.............. AGCCTGAGCTTGTCGCTGATGTGCTTAATCAC 2067 28 96.4 32 .............T.............. GACGCAAAGATTGCAATCAGATAAAACAAAAA 2127 28 92.9 32 ...........TG............... TAATCTTGAACCTATTTCATAAATAAACGGCT 2187 28 100.0 33 ............................ AACTGTGTTAATCCGCTCAGACAAGCTTTGATT 2248 28 96.4 31 .............T.............. CTTACAATTTTTTTGTCAAAATGCTGCATAA 2307 28 92.9 0 .............T....T......... | ========== ====== ====== ====== ============================ ================================================ ================== 39 28 99.2 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TATACCC # Right flank : ATTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //