Array 1 4335299-4337965 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOBV01000001.1 Xanthomonas vasicola strain CO-5 CO-5_000000F_arrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4335299 31 100.0 34 ............................... GCAAGTCGTTGCGGTGGGTACGCTCGATGCCACG 4335364 31 100.0 36 ............................... ACAACATCGCCAGCCATAGCAATTACACTTGCTGCA 4335431 31 100.0 36 ............................... ACGTCAATCCCGCCCTCAAGGACAGGAGTCCTGCCC 4335498 31 100.0 34 ............................... TTGATTACACCCTGCAACACATCTGCACCCATCC 4335563 31 100.0 33 ............................... TTCTAATCCCGAAGAAGTCCTCGAAATCCACCG 4335627 31 100.0 35 ............................... GGGCAAGAACTGGGAGCCCAAGGAGGTAAATGGCA 4335693 31 100.0 33 ............................... ATAGTCATCAATGGGTTGCCCAATGGGCTCCAT 4335757 31 100.0 33 ............................... ACCCGAATAATCCAATTCTGTGCTGGTCTTGCC 4335821 31 100.0 35 ............................... CGGAATGCACCAGTGTGGAACCAAGGGAATGGCCC 4335887 31 100.0 34 ............................... TGATAGCCCGTCACAGTAACACCAACACTTGATT 4335952 31 100.0 34 ............................... TGCGACTTCAGGGGCCGCAAGTACTCTATGACCA 4336017 31 100.0 35 ............................... TTGGTAGCTGTTATCTCGGTACAGAGGCATACCGG 4336083 31 100.0 35 ............................... TCTCTATTGGTTGGGCTTGCGTCGGTTGGGTTACT 4336149 31 100.0 35 ............................... CCGACGAACGCATACAACAGATCGCAAAGATCGCC 4336215 31 100.0 37 ............................... GGTGTCAGTTGGCCGTGCCATTAGGCAGCCTCCGCGA 4336283 31 100.0 37 ............................... TTTACGCCTGAGGGCAAGACCATCGAGCAGTGCGATA 4336351 31 100.0 34 ............................... TGTGCACCTTCTGCAACCGGGGCGGCTGCATTGG 4336416 31 100.0 35 ............................... CGCCGGTATGCATCCTTTGCAAAAGTCATTACAGC 4336482 31 100.0 36 ............................... TCCGCCAATGTGGCTCAGTCTGTGGAGGCTGGCCGC 4336549 31 100.0 36 ............................... CATCCTGACCGACGCCGGTCCGCGCATCACGGAGAG 4336616 31 100.0 34 ............................... AAGCTCGGCGCCGGTTGTCGGGATCGCGATTGGC 4336681 31 100.0 35 ............................... ACCATTGTGCTCATGTAGGTACTACGGGCGGCACT 4336747 31 100.0 36 ............................... CTCAATTCTGCAAGACGCTTGCGGGCGGCGTTGTTG 4336814 31 100.0 34 ............................... TCAGCCGGCAAGAGACCCATATCATCCAATTTGC 4336879 31 100.0 36 ............................... CCCAGCGCAGACTGAAAGCTCGAACTGATCGAGCCC 4336946 31 100.0 35 ............................... GGACAGGTCGTCCGATGTTGGAACTTTCCGGCCGT 4337012 31 100.0 35 ............................... TCTACTTGGTCTGTCATTTGCGCCCCTAGGCGGTT 4337078 31 100.0 36 ............................... ATTGTCGTGATCGCCAAGGCTGTTATCCGCGCTGTA 4337145 31 100.0 35 ............................... AGGAGCTCAATGCCCGCCCAATCGGCCGGATTAAT 4337211 31 100.0 35 ............................... GCAATTGATGTCTGAGGAGACTTGGTTTAACGCGG 4337277 31 100.0 35 ............................... CAGCGAGATGAGGCAGAAGCGAGAGCCCGTGCAGA 4337343 31 100.0 36 ............................... CGACCTAACCCTGTTACGCCTAGGCCTGCGCCGTGG 4337410 31 100.0 33 ............................... AAGACTTGGTACTTTGATGAGAGTGCTGAGGGA 4337474 31 100.0 36 ............................... CTGAGCCCGTGCCAAGTGACTTACCTGCCAAAGGAA 4337541 31 100.0 34 ............................... ATCGCGGCGGGGAAGTACCCAAATAGCACGGAGT 4337606 31 100.0 34 ............................... CGGGGACTTTGAAGATGCAAGGCTTATCGAGTGG 4337671 31 100.0 36 ............................... CGCTCTTGGTGTATTCAGTTACGACCGATGCAACAG 4337738 31 100.0 34 ............................... TATGCACACTACTGGAAGGGTGCACATAGCCCGC 4337803 31 100.0 35 ............................... CTCGCCTGGTGCCTAGAGTACGCAGACTGGCAGGC 4337869 31 100.0 35 ............................... ATACCGTCGCGTGGCAAGCCCCTGTAGCTTGATCT 4337935 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 41 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : CTGGTAATTAGAGTCAATTGTCAAGGCGTTTTGCGGTCGCGCCCTCACGGTGTCACCAGCACTTTTAATCTGACCCACTTCAGCAACTTCAAACTGACCCACCTCTCGTAGTCTTTGGCCCTTTTGCAGGGCCATGCTGACCGTAGAGGAACAAGTGGAGATCAAGATATTGGCCCGACAGGGCATGAGCATCCGGGAGATATCCCGGCAGTTGCAGGTATCGCGCAACACGGTGCGGCGTTACCTGCGCGAGGTGGCAGCGGCCCAACGCAAACCGCGTGGTGTTCGACCCCACAAGTTAGACCCGTACCGGTCCTACATTGAGCAGCGCGTTCGCGCGGCGTATCCGGCCTGGTTGCCGGCCACGGCGATCGAGCAGGAGATCAAGCTGTTGGGCTATCGGGGCGGCTTGTCACGGTTGCGCCAGTTCATGCGCAGCCTGCGTGTGATCCGTCCGGAAGAGCCGCTGGTGCGTTTTGAGACCCCGGCTGGGCAGCAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 4339974-4341450 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOBV01000001.1 Xanthomonas vasicola strain CO-5 CO-5_000000F_arrow, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4339974 31 83.9 35 ..T...TTGA..................... CAGTGCCTATGCAGCGGCTGTATCAGCTTCGACGC T,A [4339979,4339986] 4340042 31 100.0 35 ............................... TATAACCCTGCCCCGGTTTTCGCCGATCTGCTAGG 4340108 31 100.0 34 ............................... GAGATACGCGACATGATTGCGTGGGTGTACGGCT 4340173 31 100.0 34 ............................... CAACGATACCCTTGGATCGCCAAGGTGATGATGC 4340238 31 100.0 35 ............................... AGCGACAGTGAGTACGCCAAGGCAGCGCAGTACCT 4340304 31 100.0 35 ............................... CTGCGCAAGCCGATGAAGGCGAACTCCACCCGGCG 4340370 31 100.0 34 ............................... TGCGCAGTCAGGGGACACGATCGGGACTTTCGTT 4340435 31 100.0 35 ............................... CTGAACTTAAGAAGCAACTATTTAACCAATACATC 4340501 31 100.0 34 ............................... AGCGAGTCCGAGATGTTTGCCAGGGTGGTGTTGA 4340566 31 100.0 35 ............................... TTGTTTGATCTTGCAGATTTGGAAATGTGGGATAG 4340632 31 96.8 35 ..............................A TTTCCATAACTTCGATGCTCTGGGGCGCTCTGCAA 4340698 31 100.0 35 ............................... TTGCCAAGGTAGTAAGCAACGGCGGCCGGGTTATC 4340764 31 100.0 35 ............................... ATCACTGGGCTGGCGGGAAAACCAGTCAATGGGTA 4340830 31 100.0 34 ............................... CTGCTGTGCACGTCGCTCAGCTGCAGCGACTGCC 4340895 31 100.0 34 ............................... TCCGCCAGGGCGTCAATATCGGCCTGGGTAAACC 4340960 31 100.0 34 ............................... GCGCTCCACGCGGTCACGCTCTGCCTGCTCAGCA 4341025 31 100.0 34 ............................... ATCACGTCATCCATCGCATCGATATAACGGGCCG 4341090 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 4341158 31 100.0 35 ............................... AGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAA 4341224 31 100.0 34 ............................... CATACAGACCCTGCCCCCTCAATGCGCACTATAT 4341289 31 100.0 35 ............................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 4341355 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 4341420 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ===================================== ================== 23 31 98.5 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGCAAGACCCACCTGGCGATCAGCTTGGGCTATCTGGCCACGCAGGCAGGCATGAAAACCCGCTTTGTCAGTGCCGCCGACCTGATGGTGGCCATGATTGCCGCCCAACGCCAGGATCGGCTGGCCGACTTCATCCGCCGCAACGTGATGGGACCGCGCCTGCTGATCATCGACGAGATCGGTTACCTGCCGATGAGCCGCGACCAGGCCAACCTGTTCTTCCAGGTCGTGGCCAAGCGCTACGAGAAGGGATCCATGGTGCTGACCAGCAACTTGCCGTTCGGACAATGGGATCAAGCCTTCGCCGGCGATACCACCCTGACGGCCGCCTTGCTGGATCGATTGTTGCATCACGCCCACGTCATCCAGATCAAAGGAGAAAGCTTCCGACTCAAAGACAAACGCAAGGCCGGCATCATTCCATCCCGCCAAACCGCGGAACACATCGAGGTGGGTCAAATCTAAGGTGCTGATCACCGATCAAGGTGGGTCAGTTTGAA # Right flank : CACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //