Array 1 21065-20181 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRV01000033.1 Leptospira borgpetersenii strain 56142 Contig033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21064 29 96.6 32 ..T.......................... TCAGACCGAGATATGCTCGTTATATGCATTTT 21003 29 96.6 33 ..T.......................... CAACGAAAATAGAATTGTCTATTGATTTGTTAC 20941 29 96.6 32 ..T.......................... TGTTGATTTTGCCAATATTAAGTTTTCGGCAA 20880 29 96.6 32 ..T.......................... AAATCGTGAACACGGCGTTTCCGGAAATTCCG 20819 29 100.0 32 ............................. AATGGAATTCGCGATTGTTGTTGGTGTTGTGG 20758 29 100.0 32 ............................. CCACTATCACGCTAAACGATGGTGCGGCATCT 20697 29 100.0 32 ............................. GATCATGAGATCCGAATCGTGAAAATCGAAAC 20636 29 100.0 32 ............................. CCACTATCACGCTAAACGATGGTGCGGCATCT 20575 29 100.0 32 ............................. AACCATTGAGAGATGAGAGGGGGAACTGTTTA 20514 29 100.0 32 ............................. GATCATGAGATCCGAATCGTGAAAATCGAAAC 20453 29 100.0 32 ............................. ACGCTCGATGCTTTCGAACTCGGATAGATTAA 20392 29 100.0 32 ............................. GACGACCACGGGTAAAAGTAAGCTGGTATTTT 20331 29 96.6 32 ............................T CAAAGTCCCAGGCACATACATTTGGGTCGTTT 20270 29 96.6 32 ............................T GAAAACTGGAAGTCAGTACGAAGACAAGGTCG 20209 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.4 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAACGAATTATTCCCGATATCAAGGAGTTGATCTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAATTGAAGCCGGGCGTTTTTGTAGCTTCCATTAATGCGAGAGTTCGAGATCGAATCTGGAAAAAAATTTCCGAAGAATGGAAATCCGACGCGATCATGTTGTTTTCGAGCAACTCGGAACAGGGTTACGGCATCCGTTCTCACGGCGATCCTTCCCGCGAGATTATGGATTTCGACGGTTTACTTCTCATGTCCAAACCCGATCCGAAACGCGATCAGATAGAAGTCATGAATGATTCCGATTTTTCTATAACCACCGAAGACGAAGTTTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCAAACCGCCTTCTTTTAGAAGCAGATGTTCCTGATGAATCTTAGAATCAGACATAATTCTGAAGATTCCTATACAAACTTTTAGC # Right flank : GAAAAAATAAAGGAACAGAGAAAAACGTAGGGCGCGTCCAAAACCAAATTCTGCTTTATCAGAAAGATCATTTCTTCAAAGATTTCTGGAGTCGTTTTAAACTTTGATATAGATTTTCCTTTTATCTAAGAAACTTAAAATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAATAACGATGCAAGATACGGATCTGCAAATAAAACAAGTTTAGAAAAAAACCAAACTTTGACACCGACCGATTTTCCATTCTCCAACACGATCGTCCAAAAATTGAGAGTTCTCGCAAGAATTCCGGAACCTACAAAGACTAAAATCGCATTTTTACCGAATACAAAAAACGGTTGAAAAAAGATTTTCAAATCCAAACCGTTCCACTTTTTCAAAAGAATTAAAGAATCTAAATATTCAAAAAATCCTATACACAAAAAAGAGAGCCCTGTCGTATATACCGCGTAACTTCCGGTCCAAAGGCTTTTATTCATCGGTAAACTTC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 532-1839 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRV01000075.1 Leptospira borgpetersenii strain 56142 Contig075, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 532 29 100.0 32 ............................. TTTGAAAAATATCGCCACGGCCTAAGTTTGTA 593 29 100.0 32 ............................. TCGGGAAGTTCCCCCACTACCACTCTCAAAAT 654 29 100.0 31 ............................. TATCCGAGTATCGTTAATACGATTGTAATAA 714 29 100.0 31 ............................. ACGAAGAATCCGAAAGTTCAACAATCGCGGT 774 29 100.0 32 ............................. ACGAAGAGAAAAGAAAACGCAACATTGCTCAG 835 29 100.0 32 ............................. GCGTTGAATATCTTTCGTGTGAAATCATTGCC 896 29 100.0 32 ............................. CGGACTATCGCTTTTCGCGTGATTCAAGACCA 957 29 100.0 32 ............................. CGGACTATCGCTTTTCGCGTGATTCAAGACCA 1018 29 100.0 32 ............................. TAAATTTTATTTCAGAGCTATAGTATTTTGAA 1079 29 100.0 32 ............................. AGGCAATTGACGCAAAAAAAAGCGGCCCTTCG 1140 29 100.0 32 ............................. AATAGAAGCCGAAAAGGCAGCCGCGACTGCAA 1201 29 100.0 32 ............................. TATCGAGTATTTTTTATCAGTCCAGTGGATAA 1262 29 100.0 32 ............................. ACCGCGCGACCTCGATGCGAGAATCGTATTCA 1323 29 100.0 32 ............................. GACCCCGCTGGTTTAATTCATCAAACGTTCAC 1384 29 100.0 32 ............................. GACTATATTGTTACATTGACAGCTGGTCCCCT 1445 29 100.0 32 ............................. CGCTACAGTTTGATGTAGGATTTGCGACGAGT 1506 29 100.0 32 ............................. AACAGGTGAGGCAACTTGGAGAGTTGTTTATG 1567 29 100.0 32 ............................. AGTGGACTGGAATACAAGGCGTCCGGACGTAT 1628 29 100.0 32 ............................. TTACTGGAAACGATATTGTTACGGCTCCAGTC 1689 29 100.0 32 ............................. GGCCATAGTTCGAAAAAATTCCCGACGGAGAT 1750 29 100.0 32 ............................. TATGAACCTTGAACTACACTATTACGATTTCA 1811 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 100.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TATCCCGAATAATTGCGACCTCTTGTTTCGTTCGATGTGTCAATGTGATTCTTAGCCCGGTTCCGCATTTTTCAATGAAAATTGATTTATAGATAGGAAAGACACTCAATAGTTTATCGTAGAATGGAGAATTTTTTATATTTCAAAACGACAGTTCCCTTGGAGTACAACTCTGGTGAAATATTTTAGACAATCCTCTTAGAGGTTTTTCACACTTTCAGTCGGTATTTAATATGGGCACCTTACTTTTACTCTTTCTAATTTTGTTTTTAGTTACTTCCCTTTTTTCAGCAGAAAAAAGTAAGCGTACCTTAGAGTTAACACAGTGGCAATTTTCAAACACAGGGTTCCGCGCCGTATATCAGCGGGACTTGATTACGGATAAGTTTCCTGAGAAGCATATGTTTTTAGTAAGAGATTTGCCATCATAGATTGACTCGAACACAAAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGTTTTTAGC # Right flank : GTTTCAGAGGCAAGGATCTTTCCATAACGTTACCCACAAATTAAGAAGGCTTTTGGGATCATAAGGATCAAAAACTGATATTTTTCAAGTGTTCCGACAAGAATGAGGCTTTTTACTTGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58660-59055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRV01000099.1 Leptospira borgpetersenii strain 56142 Contig099, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58660 29 100.0 32 ............................. TTTATGAATCCACATCCAGGAGAAATGCTCGC 58721 29 100.0 32 ............................. AAAACGGAACTTTGCTGTTCGTTCCGATTCTA 58782 29 100.0 32 ............................. GTTTTTCAATCTATTGTTGATCGGTTTTTTCC 58843 29 100.0 32 ............................. CGGTGCATGGATCAGACACGGTGTAAGTATCG 58904 29 100.0 32 ............................. GTGATTTTTCTCAAGATTTCTCTACAGCAGAA 58965 29 100.0 32 ............................. ATGACTTCAGAGTAATTTCCTTTTCGTTAATG T [58984] 59027 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TAAGGTTTGGTTCGGGGAATTGGAAATCTGGGGAAAATCAACCCGACGGATCTGGAAAGAAAACATCCAAGTTATGATCAAAGTCCTTGGACATGTTTCAATACATCCATCAAGGAAAACATAGATCTAAGGAACCTGATTCAGAAATGGAGATTGTCCCCCATAAGTTTAAAATTTATAGATCGAAGGATAAATCTATTCCGTTTTTTTAGGACATTCAATTCATCTAATTCCGATATACATAATATTATGTTAAACAATTTCTCTCTTTCTGAACAAGATCGTTCCCAATCCTTTCAAAATATTCGGTCCTCTTTCTTTGGTTCCGAAATTCGTTTTCACGACGATCTGTTTCGCGAGATACTAGATTTTGAAGGTTCCTTCGATTTTTCTCTTACAAACCGAATCGTTTTTGTGAACAAAAATACAAAACCAGATCATATCTTTAAAAATAACTCTAAGCTGACATAATATGTAAAATTACTATATAAATTTTTAGC # Right flank : GAAGTTACAGAGAATAAAACCATTTTCGTTCAATTGAGAATTTTTACAACGTAGAATCAATGAATGCAACTTTAAGTTTTTAATATTCCTGTTTTGGAAAAATTTCATTTTTTCAAAGGTGAATGATAAACTAAGAAATTACGATCGGAGTATAAAGAATATAACTTAAAGGTCCGTTGTTTCATCTCAAAACGAAGTTTCAAAACGGAATAAACTTTTCAACAGTCAAAAAGTTCGAAAAAGAGAACAGGTGCACCGAAGATAATGATGATTTACTAATTTATAGCGCATCGAAAATAATGAAATTGATATGCGAAATCTTATTGTCGTTTTAATTTTTACCGTATTTACTTCTTACGGTTTATTTGCGGAAACCTTCGATTTAAAAGGCGAATGTAAACCCAAAGAATGGATCTGTATTTTTACCCGCGGCGAAGAGAACAAAGTAGAATTTTACGTTCAAAACCGAACACCTTCGGGAGAATATCCTTTTATCATCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //