Array 1 446380-446216 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRBS01000005.1 Alkalihalobacillus rhizosphaerae strain SC-N012,DSM 21911,NCCB 100267, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 446379 32 100.0 33 ................................ CTTTCTTTCTCTCCATCACTAGTAAGATCAAAA 446314 32 100.0 35 ................................ AAGACTGGTTCGAGCGGGTGGGTTGCAACTTCAAC 446247 32 90.6 0 ..........................ATG... | ========== ====== ====== ====== ================================ =================================== ================== 3 32 96.9 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTTTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGATAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTGTGCTATTCATGGCCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCGCACATGAAATCCCAGGGAGGTTCGCACCAAAATTCACTTTTAATATGTAATAATGTGTGTAAAAATGAATTAATGTGAGTGGGACCACATGGTAAAATAGGAGAGAAAAACGAAATTCACGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAATTCGCT # Right flank : CGCGCTCTTCTCAGCTGCCAAACGTTGGTAGTCGCACTCTTCATGCGTGCACACATGAAGAGAAGAACGCCCGGTTAGACTGAATCACCACCATCTATACAGCAGCCAAAACCCTTATTTTACAGCGTTTTGGTTTGTTTTGTTGGGCTGCTTGACAAGGTATGGCTATGTTCTGTAAAGTAGTTATCACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGCTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCAGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGCGTGCCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACCGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGATCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGACCTCATTAGAGGATTC # Questionable array : NO Score: 8.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 484457-484820 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRBS01000002.1 Alkalihalobacillus rhizosphaerae strain SC-N012,DSM 21911,NCCB 100267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 484457 32 100.0 34 ................................ ATGTCAGACATGGCCTGATTGGCAAGCGTATATC 484523 32 100.0 36 ................................ TTTGGGCTCCTAATAACGTTTTATACATATTCTCAC 484591 32 100.0 33 ................................ GATCATCGTTTCCCCTCCTATCTATAATCCGCA 484656 32 100.0 35 ................................ TGAAATTGCGCCCTCCTGCGTAAACAGTGGGGCAA 484723 32 96.9 34 ..........T..................... CCCATAATCGTGTCTTTAGCATCGCCATATAGTG 484789 32 87.5 0 .............C........C.......TC | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 97.4 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : GCCCAGCAAGCCATTCGGTTAGTTAAACAACTTGAATTAGAAACATCGTCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAACTAAAACAATGTTCAGCTGACATTTCGATTGTTTGTAAAAACCGACCAGCCGTAACAGGCGCTTTGCATGCATGGAAGATTTCAAGTCACCATTAAATAGGACCAACTTTTGTGCCTGGGCCGTTTCTTTAGAACGATTCAAGAGACAATGTTGAACCCAAGGGAAAGGATCACCTAAACGAGGATAACGAACAGTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTCGATCACCCGCACCAAAAATGGCCTTATATATGTGTTAAAATGTACAAAGATGTAATAATATGGTCTCATTTGCTGTGCTATGATAGAAAATAGAAGCGAAATCAATCATTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : CTTTTTAACAGATGCTACCGATTCCGCATCTAAAGGTCACACGTGTGTAAGTAGAGTTTGGCCCCCACTCTTTTTCACGCAAAAACGTCGCACTCTATTTTGAGTGGAACGATGATCACTTCTACCTCTTGTTTGATTCCTTTCCTAACAAACCCATTTTCTTCTTGTAAAAGGTCTTTTGGATAAATGCAACTACCATTCCCGTGTGGAGAGTGCAAAATGGCGTAGCCATTAAAGCGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCATGCGGACGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 498619-498851 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRBS01000002.1 Alkalihalobacillus rhizosphaerae strain SC-N012,DSM 21911,NCCB 100267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 498619 32 100.0 34 ................................ ATTTTGAAATTGGAAATCCAATAAGTTCATTCTT 498685 32 96.9 36 ..........T..................... TTCGTGAAACCTCACGTCAGCATTCACTACAAAACC 498753 32 100.0 35 ................................ AATAAATGGTCTGTAGATGATCTGTACACATCTAT 498820 32 75.0 0 .G........TC..........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 93.0 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : AAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATACGCCGTCATAAAAAATACCCCCTTCCGAGCTATATAATCAATGTTTAGGATGTCTCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTGGTGTTAGTTAGAACCCTTAGTATTACAGAATAGCAATACGGTGGAACGATCCTTAAAGGCAAACGATTCTCGATTTCTTCAATAAGCATTCGCCGATGCTCACTTTTCTCGAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGCCTCGAATATGGGTTACTATGTACAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : TAAGACAAGCCCCACCGCTTGCTACAACAAGTCTTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGCTAGAGCTCTTGTTACAGAAGGTAACTGATCTGGAATTGGGGTTGAAAGAGCAAAAAGAGCATAATGCCGCGGTAGCAAAAGATTTAGAAGACCAAAAAGAGCATAATGCTATGGCTGCAAAAGATATAAAAGAACAAAAAGGGCATAATGCTGCGGTCGCAAAAGATTTAAAAGAGCAAAAAGCCTATAATGCAGCATTCGCCAAAGACTTAAAAGAACAAAAAACGCAAGTTGCTGGGATCACAAAAGAACTAAAAGAGCAAAAAGAGCACTACTTGGCCATGGCACAAGATATCAAGGAATTAAAAGAAGATCAGCTCA # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 556932-557363 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRBS01000002.1 Alkalihalobacillus rhizosphaerae strain SC-N012,DSM 21911,NCCB 100267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 556932 32 100.0 36 ................................ AATCAAAGAATAGTTTGATTGAAACTTTTCGATTTG 557000 32 100.0 35 ................................ GGAATGGCCGCTACAGGCACATTGTTGAGGAAATC 557067 32 100.0 35 ................................ TAGTGGTAATTTCGCCCAAAAGAAAAAGGCATATG 557134 32 100.0 35 ................................ ATAATGGCCGCGACACGCACATTGTTGAGGAAATC 557201 32 100.0 35 ................................ TAGTGGTAATTTCGCCCAAAAGAAAAAGGCATATG 557268 32 100.0 32 ................................ CTCTCTGACATATTTGTTTGCAAATTGCCGGC 557332 32 90.6 0 ..........AT.A.................. | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 98.7 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : CGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGTTGGTGGATCAAGGGGCGATATTGAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAAAAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTTTTTTAGGTGTTCGTGGTATTAAAATGGGGTGGGATTAGAAGGATAGGTGGGAGCAACGGTTTAATTGGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATTACTAGATCACCCGCACCAAAATAGAGCGCGAATATGAGCTTATGTGTATAAAGATGTGAAAATATGGTTCATGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTATATTATCTGTGGTTTTATTTCCAGCAAATAGGGGAATTTCGCT # Right flank : TTTGCTTCCGGCGAACGGAATGTGGCTTTCTGCTCGGCGCACTTTTTATAACTGCGCCAATTAACATCCACATGAATCGACGTTCGCTTGCGATAACGACTAGTCATGCAAAAAGCAAGTCCGAAAAACCAAATAAGCAATATAGGCGCACCGACGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTCGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGACTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGAGGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACAT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 564319-564682 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRBS01000002.1 Alkalihalobacillus rhizosphaerae strain SC-N012,DSM 21911,NCCB 100267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 564319 32 100.0 35 ................................ ACACACAGCCCATTGTCTCTTCGTTTCACAGCTTC 564386 32 100.0 34 ................................ AATCACCTAATTTCTGTTGCCTTATAATCTCTTG 564452 32 100.0 34 ................................ AACCATGTGTTTGTAATCGGCAGAACTAATACCG 564518 32 100.0 35 ................................ CGTCCGGGGCATATAAATTGAATTCTTGGACTAGG 564585 32 96.9 34 ...........C.................... TTGCATTTCCCGTAAACGGGCAAAAAAAGGCGGC 564651 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 99.5 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATTTACGCATGCAGGTCAAGCACTGCTACTGAGAATGTATACACCAGGGGTCATTACCGCCATTATCGTGACCCTTCCATATTCACTATATTTGTTTTACCGGTTAGAAGCGGAATATAATATTCAGGTTAATGATCTAATTGCCAGTATCCCATACGGACTGACCATTATTCCAATCGTGGCTTTCGGTCATCTACTAGCTAAAAAAGTGATTCGGTAAAAAATGATAAGGTATTTCGTGGATCGTTTTTGGATTTAACATTGATAACAAGTGAGCAAACAAATATAACTTTGAGAAATGCTTTCTAACCTATTATTTTGGTGCGAACCCTAAGCGAACATAAAATTCCTGGATCACCCGCACCAAAAAAGAGCCTAAATATGAAATAATATGTGTAATAATGTATAAATCTCGTTTACGTCCTATGATATGATAGAAGAAAAGGGTGATTTTTCCCTATTATTTATAGTTTCACTCCAAGAAATAGGGAGATTTCGCT # Right flank : TCCATAGTCTTTGGATAGGGCATCGATAGGGTTAGCCGGAGAACTCTATGTTTATGCCATTTCCATTAGGCCACACGGCAGTTTTCTTTTGTGGGTTGTGAAAATAGTGTCCACGTAAAACGAGAGCCAGGAGTTTTCCTCCTGGCTCTGTCTGCTTTTTTCAAGAATTGCTTTGCTAAAATGCATGACTAAACAGCTGAACCAATCCGTTCGATGTGGATTTTTTGCTGATACTGTTCGGCTTGTGAAAAATCAATCGTTGGCAGCCAGTGGAGGCAGTTTGCCAATGAGAGGGCGCTGCCTGCTAATAGAGCTGCTTTTACATCGTTTGTTTTTCGCCACTCGCGTATAAAGGTGCCGAGAAAAATATCGCCTGAGGCGGTAGCATTTGTTACGTTAATCGTTGGGAGCGTGACACGCCAGATGTCTCCGTTGATTTTGGCGACTGTTCCTTCGCCGCCTAATGTGACGATGCAGTTAGGGTAAGGGCTGTTTTTTAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 571270-571567 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRBS01000002.1 Alkalihalobacillus rhizosphaerae strain SC-N012,DSM 21911,NCCB 100267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 571270 32 100.0 35 ................................ CCATCTTACAATTACCGCGTTTCTTTTGTTGGACG 571337 32 100.0 36 ................................ TACCAGTATTCAAACATAGTGCCATCACGAACAATT 571405 32 100.0 33 ................................ TCGAACAGTTGTTACATCAAAACGGTGTGGAGC 571470 32 100.0 34 ................................ TCGCGTTGCTCTTGTCTACAATTTGCCGCCTCAT 571536 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : AAAGCAAAAGAAGCAGCGAAAGAAATGGCGAAATCAAAAATTCGCATGGTTGGCAGTGAAAACACGGTTGTGCCAGCGTTTGCGTGAAAAGTGTGAGCCCGGACTGTCACCTTCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTTTTCATTAATTGGGGAGGAAGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACCTCCTTACGCAAATAGAAGCTTTTTAATGGAAAGAGTAAAGTAGAGATAGACACAATTGAGCCAAGGAGATTAACTTTACAATTATTCATCTTTTGAGCCGTGATTCTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGGACTTTAATGTGGGATAATATGTGGAAAAGTGGCAAAATGTTGTTGGTGTCCCATGGTATTATATAGAAGAAGAGCGGCTTTTCTCTATTATTTATTAATGGGTTTCCAATAAATAGGGGAATATCGCT # Right flank : TTTTACCCCATACGACAACGCTAGTGAAGCTTGGAATTGGTTACTGTCCAGTTCCCTAATTTAGGGCTCCATTAGAATTAGGGGAAAAAGTAATGCAGAAATTAATAAAGGAACGAAAACAAGAAAAAGTTTATAGTTTAAAAAATAAAAAACGCACTTCTTGAAAAGTGCGTCTAAAAAACAAAGATATTTATTTTTCCTCAAGGGTTGTAAAAAAAATTTTCTCTTAGATTAATGAACGGTATCTCCTTTATCTCGAGTTTCAATTGTCGGAGAATCACGATCAATGACGACATTTGTTTGGAGGGTAAAAGAAACACACAATAATGCTGCAAATAGGGAAAACCATATTTTTTTCAAGGTTGATCGACTCCTATGTTTGATAGATTTTGGCGTGCACGATAGGCGACGTTTAAATACTTCCACGCTAGTTCTTGTTCTCCTTTTTGTTTAAAAAACGTTGCTGCTTCCTCTGCGATCTCCTCAATTTCAAAGTTCAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 575579-576076 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRBS01000002.1 Alkalihalobacillus rhizosphaerae strain SC-N012,DSM 21911,NCCB 100267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 575579 32 100.0 35 ................................ CAAAAAGGATCAGCGATGAAGCGTTTTGCCAGATA 575646 32 100.0 34 ................................ AACTAGCAAGGAAAAATGCAAAATCTCAATTACT 575712 32 100.0 34 ................................ AAACAACTGCTTGATGAATTTAAGTATACACAAC 575778 32 100.0 34 ................................ TGTCTCTGACATTACTACCCCCCTGTTAGCTAGG 575844 32 100.0 34 ................................ ATACGCCCTTGGCGCGGCATGGCGCTTTTTGTTA 575910 32 96.9 36 ........C....................... CATTTTAGGAGTTGACGCAGCGAACATCCGTTTATC 575978 32 96.9 33 ............A................... CCGTCTACGCACCCAATCACCAGGGTCGCCATC CT,G [575984,576002] 576046 31 75.0 0 ...A....CC.G.C....A.....G..-.... | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 96.1 34 GTCGCACTTTTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAATATCCGAACCAAACCGATGCATGGAGTCTTGTTCATTTGGGGAAGGTCAGTTCATGGCTTTTATTAGTGATTGTTAGTTTTCTGATCGTCGCGACATTAAAACAGGTGAAGGGGAAAAGGCGCACTGGAGTAGATGCTAGTCAATCTTTATAAAAAGCAGTGCTTTAGTTTAGTAAGGAACTTTGCGTTTTTACGATTCTTATTATTTTGCCAGTGCAAACAGGTGCTTTTTTGAAGAAACCTATAGATGGCACAAGTATAATAGTAGTAAAGTTGAGGAGGCAACATTTACTTCGTATTATACGCAGTTCTTTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAATTATGAAAAAATATGTATGAAAATGGCGAAATGTTGCTCGTTGTCCATGATATGATAAGTGAAAGAGCGGTTTTTACCTATTATTGATTGTTCTTCTTCCAATAATTAGGGGAATTTCGCA # Right flank : TAAAGGCGGGAGTAAGCCCCTCGCGCTTGCTCCCTTGTCACACGAGTGCGTCGCTAAGTTTCTAGCTATAGAATTCCGACCCCAGCTTGCATAAAAAATCCCCTTTTCTCGGAATCTCCCCAATTTCCCGCGCCCCAAAAATGTAGCCACATTTTTATTGCTCATAAAATTTTCCTAAATGGTAATATGTTTAAAAAGACTAGATACGGGGGGAGCGAAATTGGAAATTCGTACAGTGAAAGACTCTGACTACTTATGTAATTTCTCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCTGATAAGTTGCCCAAATTATTTTTCGACCACTTTAGCAATACAAGTTTCATTGCTGAAAAGGATGAAAAACTTATTGGCTTTCTAATAGGATTCCTTTCTCAATCACATCAAAAAGTAGCCTATATACATTTTGTTGGAGTTCACCCTGATTACAGAAAGCAAAGCGTTGGCAAACATTTATACAATCAATTTTTT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 579994-580491 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRBS01000002.1 Alkalihalobacillus rhizosphaerae strain SC-N012,DSM 21911,NCCB 100267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 579994 32 93.8 34 .........T.A.................... GATGACAGGGTTTAATGATACAAATATCCTCCCT 580060 32 93.8 35 .........T.A.................... ACCGAACTCGGTAAAGAATGAAACAATCGCTTTTC 580127 32 100.0 34 ................................ AACGATTTCCTCTTGATTGATTTTAATAATCATT 580193 32 100.0 34 ................................ TTCGCTCACGTCAGGCTTCAATGATTTTGACTGG 580259 32 100.0 34 ................................ ATTAAACAATATATCGTCGGAAATAATGCGGGTT 580325 32 100.0 37 ................................ TCAGCGCAAGTCTTTCCGTAGCCCCTACGCTGGCTAA 580394 32 100.0 34 ................................ AGGATTACCAGTCTACAAAAGATTGGACGCTTGA 580460 32 84.4 0 ........TT.A........A..........C | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 96.5 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : TATCTCTCCTTTCAAATCTTAACATTCTAATGAATTTTAGCAGCAGTCAATGAGAATGAATAGTCTATAATAACTTGTGTCTATATGCTATAATTAATCTAGGGAAAGTGTAACTTTTTTAACATAGCTAACCGTACTGTAAACGGGTGACCCGTTTCAACCTCTAGAAAGCAATTCATACCTCCTTTCGTCCACAACGAATATCGTTAAAACCCGATTTTAAGAACAGCCTTGATGAACAAGCGCATGTAAAAGAGCAGAAGAGAATGACATTGATTGCCCTTCTTAGTATTTAAAAGAATAGAAGTGGTGTTTTTTTGGTGCGAACCCTAAGCGCACATAAAACCCCTAGATCACCCGCACCAAAAAAGAGCCTAATTATGAAAAAGCATGTGTAAAAATGGTGAAATGTTGTCTGTGTGCCATGATAGAATAAAGGAAAAGAGCGGCTTTTTCCTATTATTGATTGTTTTACTTCCAATAATTACGGGGATTTCGCT # Right flank : CACGCTGCTGCCGTAGCAAATGAATTTAGCTCAATGGAAGAAAGAGGACGAATTATCAATTTTTTCACTTCTGTCGTCGGTCAAATGTTTCCAACGTATAGTGGGTACGCTGATTGGCTTGAATGCTGGCGCCTTATTGTTTGTTGTTGTCGCGTTTACGTTTCTGGCGGTTTCGTCATTCCTGTTTGGCTGCAACCAGCGATAGTCATTTCCGACAAGGGCACATCTTCTGGTTATGGCGTTTTTATTTTAAAATCGACACCGAGGCACTGGTTTTTACCGCTTGGCGCTAACCAATGCTGACGCCTTTCATTCAATAAAAATCATCTTTAGTAAAGCCATTAATCAAATCGATCAATCTAGATAAATGGATTGTATGCGCGTCTTCTTTACGGGTACAAAGGTAAACAGGCCGTTTAATCTCGATATCTTTTACAAGAACTTTGCCTAGTTCATTTCGGTGAATATGGTCTTTGACGGCAAGTGAGGGGGCAAGCATC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 593127-593291 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRBS01000002.1 Alkalihalobacillus rhizosphaerae strain SC-N012,DSM 21911,NCCB 100267, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 593127 32 100.0 34 ................................ AGCAGGGAGAACCTTTTCAATCGATATTCCCATA 593193 32 100.0 35 ................................ ATAATATATTCCCACCAATCTGTATCATTGACTAT 593260 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TATTTTTCCACTTGTCAAACGATAAACGGAATCGTTCAGGAAACCTATTTGCTTCGCAATCGTAGCAACTAAGAAGATAGAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCACCGGAAGAAGCGGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTTTTAATCAGGCGAGAATCAGGCCCAAATTCACACATATATCAAACAATAATGGCGAAACAGATACACAACCTCATGTGGGGAAGAAGAAATGGTTAGAGGAGCTCCATCAATCGTTTCCTTGTGAGCATTCAGTATGATTAAAGAAGATCAAAAAACACTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAAATAATATGTGTAATGATGGTAAAATGCTGTCTGTATGCCATGATAGAATAAAAGAAAGGAGCGGCATTTTCCTATACTTGTTGTTTTCCTGTCAATAAATAGGGGAATTTCGCT # Right flank : TCAACAACAGGTCAAGTTGGGCATGGTACTGTCTTTGTCGCACTCTTCGTAAGTGCGTGCTCGTTCGTATGCAACCTAATAACCAGTAGGTTATGGACGTAAGGCATTTGGGGGAGGTGGATGTGCCATAAAACGAAAACCAGTAGTTTTAGGTGTAGGCGGGCTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGATTCTGTGCCAGGGAGAACCCAATTAAAAGAGAATGAAAGAGACTCGAGTGATTATTGGACCGCAGACAACATGAAAAAAGCTGTTCCGGGGGCAGGAATGGAGGACTAACGCCTGCTCCTCGAACAGCTTTTGCTAGCTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAACGGTTAAACGGGGTGAAGTATGAAACGGCGTAGTCTAAGTTAATAAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //