Array 1 292850-292640 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRX010000011.1 Nocardia terpenica strain N-36 NODE_11_length_311318_cov_25.639492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 292849 28 100.0 33 ............................ CATCCCACCAGCGCGAACTACCGATGTGTTCCG 292788 28 100.0 33 ............................ CGCTGCTGGCTGTGCGAGGAACGGCGCACCTGC 292727 28 96.4 33 ..........T................. CCTGCGCGACACGGTGGTGACGGAGGTTGCCGG 292666 27 85.7 0 ........T...T.......-....T.. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 95.5 33 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : TCTGGGACACCGACGTCGTCGAGCTGTGGGACCGCAAAGGCAATGTCGCCGCAGGCATCTCCTACGACGACGAGGAATTGCCGTGGTAGTAATCGTCCTCACCGCGTGCCCGGCAGGACTACGCGGACACCTGACCCGGTGGCTACTCGAAATCAGTCCCGGTGTCTACGTCGGCATCCTCACCACACGCGTCCGGGAACTGGCCTGGCAGCGAGTTGTGGACCTGTCCCGTGACGGCCGCGCGATCATGATCTACTCCACCCGCTCGGAACAGCGCCTCGCGTTCAAGGTCCACTGCCATGACTGGGAACCGGTCGACATCGACGGCATCCACTTGATGCGCCGCCCTCACACCGCCGACCGCGCGCTCGGCGGGGCGCGACCGGGCTGGAGCAAAGCGAGCCGATACCGCAAAGCCGCGCGACAGCCAAACAGTCGCTCTACGACTGAAAGTGAATGAAATTCCGGACTTTGGCCACGAACACCGCAGGTCAGCAAGT # Right flank : TAATGACGAGATTTTATTCTCGGACCGTTGGCGGAAACGTTGCGACGGTAGCCGATTTAGGTAAGCATGTCGGGGGCTTACGCGCGTTGGCACTCTCGTTGCTGTGGTGATCTCAAGGCATCTCCGCTCGTATCTAATGGCGGCTGTCTGCTTTTGATGTTGGCTGGGTCGACACGTTGGTGTCCGTCTCCGATGCGCGTGGGACGGTTCGCATTCGGGCCCTGGGGCTGGCTGGTTGTCTGGCTTACAGTTCGAGTGTGGTGCCGGGGTTGAGTATCTCGATCGTAGTGTCGACTTCGGGAGTGTCGAACGTGTCGGCGTGGTGTGCTTGGGAACGTAGCTGGTCTTCGTGTGTTTGTTGTTGGGTGGTGAGGTGTGTTCGGCGGTGTTGTTCGGCACGCAGGGTGTCGAGTTGGTGTTGGAAGTATTCGGTCAGGTCGTCTGGTGGGGTGGGGTCGTAGTGACGGACGCCGTCGGTGTATGTCGGGGCGGGGCCGAAG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 303037-302063 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRX010000011.1 Nocardia terpenica strain N-36 NODE_11_length_311318_cov_25.639492, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================= ================== 303036 28 100.0 33 ............................ CAACGATCGCGCCTCCGGGCGAACGCTGCTGGG 302975 28 100.0 33 ............................ CCAGTTCAACATCCGCTGGGAAGAGCACTCCCA 302914 28 100.0 33 ............................ CAGCCATGCGATCCAGGTGACGGCGCGGATGGC 302853 28 89.3 0 .....................G..CT.. - Deletion [302826] 302825 21 71.4 33 -------..............G...... CAGGCCGGTGTCGGGCTGGGCGATGGCTTCGCG 302771 28 96.4 33 .....................G...... CAGGCCGGTGTCGGGCTGGGCGATGGCTTCGCG 302710 28 96.4 33 ...............A............ CACGCAAATGGCCCACACGATCAACCGGAACGC 302649 28 100.0 33 ............................ CAGTTCGGCCTCGTACTCGATCTGCTAGTCGTA 302588 28 96.4 33 .........................A.. CGGTGTGGCGCGCCTTACCTGCCGATGCAACTC 302527 26 89.3 33 ...........--............A.. CTATTGGCGCACAACCGGCGTCGGCGGCCACAA 302468 26 92.9 33 ................--.......... CCATGCTGCGGAAGCACACAACGCGAATCCGCC 302409 28 92.9 32 ..........T.T............... CGCCGAAATATCTGGCGGCGGACAGTCTTCCG 302349 27 82.1 52 ........T......A....A...-..T CTTTGCGCGGGGATGAGCCCCTGCGAGCCTTCGCAGGCCGCCGCTGGCAGCA 302270 26 92.9 32 ................--.......... GAGCAGTACTTCACCGACCTGCAGGCGATGCT 302212 28 82.1 93 ............TT.AT.......T... CCGCCGAAATGTCCGGCGGCGGACAGTCTTCCGGCGTTCCCCATACGCATTGGAATGGCTCTTCATGCAGGGATGCAGCGGCCCTACTGCTGA 302091 28 75.0 0 ..........TGT.........AAT..G | C [302081] ========== ====== ====== ====== ============================ ============================================================================================= ================== 16 28 91.1 36 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : TCACCATGTCGGCAGCCGACTGGTCGGCCTTCCTTGGTGCAGCAACCGCAGGCATCCACATAACGCAGCACGATCTCCCTACCATTGAGCGCGCCGACACCGGCGAAGTAAGCCTGCGCGCGGCGGACGGGACGGTCCTCACCTACACCGCCGCCGAGTGGCTCGCCTTCACCTCGGGCGTGCGAGACGGAGAGTTCGCTGCCGCCTGACCGGAAAGCTGTTGGCCTGTAGGGAGTCTGGGAAGTCGTGGCCAGGTCTTGGAATAATGGCTACGACTTGGCCAGAGTTGGCCGTAATTTTGAGATTCGTCCTTGAGCTGTGGCGTTGGCCGTGCTGAGACCGGGCGGAGGTTCGTTTCTGCCGCTCGGCTGCTGGTAGCCGAGCGTCACCGAAATGGTTTGGGGCGGACGACCGCTAGGAGGACCAGGAGAGATGTTGGGAGGCAATTGAAACTGAATGAAATTCGGGCTGACTGCGGTCATCGGTGCTGGTCAGGAAGT # Right flank : TGAGATCTATCGCTGCGGCCGAGGTGCTCCTTGCTTGTGCCGGGATGGGTTATGAAGGGTTGGCCGCGCATGGTCTGTTGGTGTGCGTAGGACTGGACGGTCGTGTCCATTGGTTGGTTGTAGTGTCGAGTGTTGCTGGCGTGTCGGTGATTTGGGGTGCACTTGCCAGTTCGTGAGTGTGTGTCGGTGGGGCGTTGTACTCTGCTGCCGTCCTGAGCTGTTCGGCGGTCATGTCGTGTTTGGGGGTCTTGCTTGTTGTCGGATGCGACGTTGTCGGCGTGGGCGAAGAGTGACCGTGACGGTGGGAGTTTGTCGCTGGTGCGGCATCTTGCTGATTCGGTGGCGGTGGCTGGGTTGGTGTGGGATCGGTGGTTGCCGGAGCGGACGAGGGAAGTGGTATCGGCTTGTCTGCCTGGGGGTTCGGCGGATGGGCGGCTGCTGGTGCGGTGGTTGGCGGGGGTGCATGATATCGGGAAATTGACTCCGGCGTTCGCGTGCCA # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 427787-427454 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRX010000007.1 Nocardia terpenica strain N-36 NODE_7_length_474050_cov_31.701686, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 427786 28 96.4 33 ..............T............. GTCCGGGTACACCTCCATGTCGGCGAGGATCCG 427725 28 100.0 33 ............................ GCCGCGGATGGTGTTCTGGCCCGCCGCGCTGCG 427664 28 100.0 33 ............................ GAGTTCGTGACGGCCTACGGCGACCGGTCGGAG 427603 28 96.4 33 .................T.......... GCTGGGCGAGCTGTCGGCGCAGTTCCAGGACCG 427542 28 100.0 33 ............................ CCGCCCGACCGCATGCCCGCGCTCGGCATGGTG 427481 28 75.0 0 ....................A.CCACTG | ========== ====== ====== ====== ============================ ================================= ================== 6 28 94.6 33 GTCTTCCCCACGCACGTGGGGGTGCACC # Left flank : GTCGCACTCGCCCACCACCTCGCCATCCCCCTCATCCCGATCGCCGCCTCCGGCGGCACCGCCGAACAGACCTGGCGCGACATCCGCACCGACATCGTCGGAACGCCTCTCGCCGCCGACTTCGACAACCTCTGCAGTCCCGACCCGACGATCGTCATCGACGCCGCGGTACGGCTTCTTGCCCGCTATCTCGATCTACCGCACTAAGTGCCTATGAACCTGACTGCACCACAACCAACGTCAGAGTATCGGTGCCCACAATGTGCGAGTTCGCATAACCGCGTCGCCGCGAACGCTGTCGTAGCGGATGCACCGACGGTGCACATTCAGCCCGACCGAGATCATGCCGGACTGTGTCCGGATAGCATGGCTGAACCGTGAGGGCCCAGCCAGAATTCGCCCGGCACCGCCCACGATTTATCAGCAAAGCCGCACTGTCATATACGGTCACAGATGACCAACGGAGGCCCTACGCCCGACAAAACTGCTGTTCGGAAAGT # Right flank : TTGACAGCGAACCGAGAAACCCTCTGCGGCGGCAGGTTCTCCGCGCCTGGCGAAGAGCACGGCTGAGTGTGGTTGTGCCTCGATCGGATCAGATATTTGAGTTCTTCGCGACTCGACTCGCTGGTGTCGGAGCCTGATTAGAAGTCGGCGTCTATGTCGTCGGTTTCCGGCTCTTCCAGCGGTAGGAACCGAACCAGTTGCAGCCCGTCGAAGTCGGCGACGCGGCGGTGGCGTTCTCCAGCGGTCTTGATGCTGAAGCCCTGTTCGTTGGAGGCGGGGTGGATGCAGACGGCTTCGCCGCCGCCGACGGAGTCTGCGACAGCATCCCATAGCTCGTCTCGGACCTTGGCGGACACCGTGCCGACGTAAAGTCCAGCGGTCGGTTCGATCAGCCAGCGCGACAGCGCGCCCCGGACGTGGTCGGGAACCACGGTTGTGGAGATGACGAGGATGTTCGCCATCAGAACTCCGGGTCGAGGTCGCTGCCGTAGTTGACGCCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.60,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 148692-148969 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRX010000015.1 Nocardia terpenica strain N-36 NODE_17_length_153362_cov_27.274272, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 148692 28 100.0 34 ............................ CGCCGGTTGAAGATCACCAGGCGGGTTCCCTCCA 148754 28 100.0 33 ............................ CCGGTGCTGGGCGGCGGCGCGGTCGATGGCATC 148815 28 92.9 34 ..............T............T TGGTTCGTACTGGGGTTCCCATCTGGATCAGCTT 148877 28 92.9 31 ............T...T........... CGTGGGCCACCGCATAACCGGCGGTATCGTC A [148904] 148937 28 85.7 0 ....C......G......A.......G. | TA,A,TG [148944,148947,148953] ========== ====== ====== ====== ============================ ================================== ================== 5 28 94.3 33 GTGCTCCCCGCACGCGCGGGGATGAGCC # Left flank : CGTGCTGACCGAGCCGACGGTCTCTGTCAAGGACGCGGCCCGAGCCCTCGGCGTCGGTCGGTCCACCCTCTACGCCGCAGTGAAATCAGGCGAGGTACCAGCCATCCGAGTTCGCAACCGGTTACGAATCCCGTCGAACTGGGTGTGCCACATGCTGTATCTCGACGCTGACCCGGGCGGCGGCGCGCCGGAACGATCTCATGGGTAACTTTCGCTGCGGGTTCTGTCTCGATAGGAACCCGCAGGGAGCGCCGAAGTCCCGGGAGCAGTTACGATTCCAGGTCGCCGATGATTGCGGCCCTGGTGCGTCGAGGGATGTCGGCGTGACGCCGACCTTCGAACATCAGGGGCGATGGTAGCCAGGGCAATCCTTCGCGATCAGCTTGTGGTCTCGCAGGAAGCGGCAGGCTACCGTCAAGCGGGCGGGCGAACAGGTTGGAGAGCGATCGAAAGTGAATGAAATTCCGGCCAACCGCCGTGATCGTCGCAGGTCGGCAAGA # Right flank : CGTTCGAGATTCGGAAGCTGCGGTCGCTGCTACATCATCTGACGGAGTCCCGGCCATCTCGATATTCGTTGTAGAAGTTCAACGATGGGAGGGTCAGGACGCCACCTCGGTAGCTGGTGAGGATGTTGGTCAGATCTGCTTTGGCGGTTCCGTCGTTGGTTTCGCCTGAGTCGACGACCGCCACGATGTCCTTGAGGTGGTTGTCGGGTCCGAAAAGGTAGTTGTAGCGGGGGTTGTGCTCGATGGTGCCGTCGTGGTTCTGGAGGGCTTTGACTAGGTCGAGGTCTGGTTGGTAGAAGCCGGTTAGGGAGTAGTTGATGTAGGGCTGTTCGTGTTTGGTGGTGTCGGTGGGGGGAGAGTCGCCGAATTTGTCGTGGGTCCGGTCGTCGGCTTCGGTGGTGAGGGCGCGGTCGAGGATGTGGCGGAGGATGCCGTATTGGTAGGGGGTGGCTGTGGCGGATTGCTGGTCGAGCACGCTGCTGATCCAGGCGTCGGCGATT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 590549-590954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRX010000004.1 Nocardia terpenica strain N-36 NODE_4_length_634590_cov_33.624465, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 590549 37 100.0 36 ..................................... GTCACCGTCGCCCACCACCGTCAAGTGGTCGCCCTG 590622 37 100.0 35 ..................................... CCTGATGGCGCGGGAGATGGTTTCGCGGCGCGGTT 590694 37 100.0 36 ..................................... CAATCCGGTGCGGGCTACGGGGATGGGCTGGTCCAA 590767 37 97.3 36 ......................G.............. ACCTCGTAGGCGATATAGGCCGCCGCCAGCGCGCAG 590840 37 89.2 39 ....................A.G.....C....G... ACAAATACGGGCATCAGCGCGACTGCGGTTGCTGTCGTT CC [590860] 590918 37 73.0 0 ...A.....G......C...CC.TT.C...C.....T | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 93.2 37 GTGGCGGTCACTCGTGAGGGTGACCGAGGATCGAAAC # Left flank : TGATGACCAGGTCGCGACCCGTATTGGGGGCACGCTCGGGCCCGTCATTGCCGTTTGCCCTGCGTGTCCGGATTGAACACTCCGCCAGGACAGACCGGTAGGACCTCAACGCAATACGAGTTTTCCGTGACCATGCCGCGGCTGCTGGATTTCACCAAAACCGCGCTTGCCCCGTCAGATTCGGGCAACGGGCAGGACCTACTGACTGGTCGATCTAGACGGTACCGGTGTGGGTCAGCAACAGAGGGGCCGCGCTCGACGCTGGGTCGGGCAACACCCGCGCGGCCCTCTGATCTCACTTGGCCGCTCGATCCCGCAGCTTTTCGTGTAGGAGCTCTCTGCTGCACGGACATGCCGAGCGGGTAGCAGGTTGTGACCACCTCATATAAACGGCGACACGCCTGTAGGTTCCGAACTGCCGATGAGGGATTATAGAGTCGGTGGCCCGCGGTGCAGGCGGTCGATCGCGTGTGGAATAGCGAAAACCCAGGTGGAGTACT # Right flank : TCTGAATGGGGTTGGCGTTCCGCCGGTTTCGATGGTTATTCGGTTACTCACGACGGGTTCGTTGTCGGGTTCGGCGGCGCCACCACAGCAGCTCGAGGACCGCCATGGCTGCGTCTCGGCGGCTCTGTGACTTGGCGAAGATCGCGACCACCGAGGCCAGAGTGATGAGGAGCATGTAGACGACTCCGGCGGCGCCCCCGGCCGTGGCGACTCCTACGAGCCCCGGTACCCACGATGCGAGAGTCAAGTTGTCTCCGATAGCGCGTCGGTCTCTGCCGAGGGACGAGGTTAGCGGAGATCCGGAGCGCGCGTTGGGAGTTCGAGGAATCTCGCTAAAGACACCTTGGCGCTGCGAGACGCGCCTCTAAAGTTGTTACCGTGGCGATCGCGGCAGGACCGCGATCGAAGGGTCGAAACAGAGGCGCGACGTCGTTGGCGCCCAGGTGAGTGTAGTGGATTGGGAGGCGGCGAGCCTGCTGTCTCCCCAATCATCGGATGCA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCACTCGTGAGGGTGACCGAGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.90,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 599258-599808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRX010000004.1 Nocardia terpenica strain N-36 NODE_4_length_634590_cov_33.624465, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 599258 37 100.0 35 ..................................... GGGAAAACCGGTGCTTCATGCTCTCCGCCGACGTG 599330 37 100.0 37 ..................................... CCCCACTGCTGGCCTGGCCGCGACGATGATGAGCTGG 599404 37 97.3 38 .......................T............. TACGACGCCGCGAACAGGTTGCACACCGCGGGATCGAA 599479 37 97.3 36 ...............T..................... GTCCTGCTTGAGTTTCCTCGGCTGCCGAACACGAAG 599552 37 94.6 37 ....T.......T........................ CAGCAGGTGGTCGCCAATGCCTATACCGACACGCAGC 599626 37 94.6 36 ...................AC................ AACCTCGGCAACGTCGTGGGCGGCACCTGCAAGGCG 599699 36 97.3 37 ................-.................... ACGAAAACCCTGAGCTAGGGAGCGCACGCCATGCAGA 599772 37 97.3 0 ...................................C. | ========== ====== ====== ====== ===================================== ====================================== ================== 8 37 97.3 37 GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Left flank : CTTCTTCCCTCAGTCCAAGCACGACTCCTCGCCCGGCACCTGCGCGGAGAACTACCCACCTACCTGCCCTGGACGCTATAGATGGAACTCCTGGTCACCTACGACGTCTGCACCGCGACTCCTGAAGGGAAACGAAGGCTCCAGCATGTCGCGAAACTTTGCGAGGGCTACGGATTACGTGTCCAGAAATCCGTTTTCGAGATCGTCTGCACGGACGCTGAACTTCTCACCCTGACCGACAGCATCCACCGAATGATAGAGAACACCGAGGACAGCATCAGAATCTACCAAGTGCCCACAGGCTCGTTCAAGACCGTCCGCACCATTGGAACAGCCGAGCTATTGCCGCACCACGACCCGTTGATCCTCTAGTTCGGAACCGCCGATGCACATGAATTCCTAGAGAGGTTCACAACTGTCGAGCACCGTTTTGGTTGTAGGACCTCTCGAAAGAGGAGCTGATTGCATGGCCGAGATGGGATCAGTGCAGGTCGCGCACC # Right flank : CCCTGCCAGGGCGCGCGGGGTGTAGAAGGGTTCGCAGGTGGCGGTAGGTCATCACCTCCGGTTCGATAGAACGATCGGGATCCTGAAAAGAATTGGGGGAAGGAGCATTCGAATGATCAGCCTTCTGAGGCGACTGTGATCGGCCGTCGGCCTCGGGATCGGATCGGCCGATCGAACGTCCCGTCTGAGCGCCACCGGATCCCGGGCACTGCCGTCTGATCGCCACCGATCAGCGCGACTCCGAGTCGCGCCAGGCCGGTCTTCGCGAATCGGAGCAAGACCTCCACCAGCGCACGCTTCCAGAGCGGTCGACCTGCCGATCGATGCCGGCTTCGGCGAGTTTCGGTGCCGGTAGTCAGGATTCGAAGTCGAAACCGAGCTCGGCCGCGACGCGGCAGGCGCCCTCGGCGATAGATTCGCCGACCTCATCGGGGTGCATTCCGATCTGTAACGCGGTATCGAGAAGCTGCGTGAAGGCGTGCTCAGGGTCCGAACGCAGC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.10,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //