Array 1 10-1136 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEUR01000257.1 Escherichia coli strain KCJK8535 NODE_257_length_1245_cov_3.435599, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 71 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 132 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 193 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 254 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 315 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 376 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 437 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 498 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 559 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 620 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 681 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 742 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 803 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 864 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 925 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 986 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1047 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1108 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63616-63037 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEUR01000007.1 Escherichia coli strain KCJK8535 NODE_7_length_72320_cov_6.411342, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63615 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 63554 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 63493 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 63432 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 63371 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 63310 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 63248 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 63187 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 63126 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 63065 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //