Array 1 163-2231 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIGX01000219.1 Xanthomonas theicola strain CFBP 4691 XthCFBP4691216, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 163 28 100.0 32 ............................ GACTCAAGACCTGCGGGTTGCCGCTGCCTGAT 223 28 100.0 32 ............................ ACGCCGGCCGTGGGCGTCATCGGCGGTATCGA 283 28 100.0 32 ............................ CGCTGGCGGCGCCCTGACTCGAACAGGGCTCG 343 28 100.0 32 ............................ AACTGGGCCGCCCGCTCAGGCTCAGGAGCCGA 403 28 100.0 32 ............................ GAAACCACAGCCAAGCCCTGCCATCCGGCGGG 463 28 100.0 32 ............................ GGCAAGCACTGCGTCCTCGGCGTGGGCCAGAG 523 28 100.0 32 ............................ AGCTCGATCAGCGAGCGGGCGCCGGCGATCAC 583 28 100.0 32 ............................ TGCAAAGAAGACGTCATGCCGGATCAGAAGAC 643 28 100.0 32 ............................ AACGGGACAGGCGGTATCAGAGTGTACGGGCT 703 28 100.0 32 ............................ AGGTGTAAAACCGTCCTCCCATGACACGCTCA 763 28 100.0 32 ............................ ACATCCTGCTCCGACCGTCATCCGTTTCGAAC 823 28 100.0 32 ............................ AAGACAAAAGCACCTCTGGCGTAAGGCGGAGA 883 28 100.0 32 ............................ AAATGCCGCCCTCCGATCAGCCAGATACTCAG 943 28 100.0 32 ............................ AATCTGCTTGCTGAGCGTCCGCGGACCGTGGG 1003 28 100.0 32 ............................ TCACGCCAGAGGAGACAGTAGATCGGCGCATC 1063 28 100.0 32 ............................ TTGCCGATGAAGGACGGGTTGATGTACGTGCC 1123 28 100.0 32 ............................ TGTTCGACACGCTGCCGGATCCGCAGGAGGTC 1183 28 100.0 32 ............................ GCAAGCTCATCCGCGAGGTCCAACTGTGAAGC 1243 28 100.0 32 ............................ AGTCCGTAACGCACTTTGCCGAACGCGTCGGA 1303 28 100.0 32 ............................ ACGGGAGAGTGAGCCGGATCACGCCGACCTCC 1363 28 100.0 32 ............................ CGATCACGATCTACCCGGACGCCAGCGGTAAG 1423 28 100.0 32 ............................ CATATGACATCCAGGTATTCATCCTTGAGGAC 1483 28 100.0 32 ............................ GGCGCGGCCTGAATGCCCGGCAGGCGGTCCAC 1543 28 100.0 32 ............................ GTACCGCTCAAGTAGTGCGACGGCGAGCACAT 1603 28 100.0 32 ............................ TGGCTGCGCCTGGTCGTCGCGCTGGGCGTGCT 1663 28 100.0 32 ............................ ACATGCGGCGCTGGCCGTGCAGCCCGTTGAAG 1723 28 100.0 32 ............................ AGTTAATCTCACGATTGCCGCTCTTGGTTTCC 1783 28 100.0 32 ............................ CCTGGTTGACACCGCTCAGCCGGCCGTCACGG 1843 28 100.0 32 ............................ CACCGGCCGCCGCGCTTGCTGGGGGTCACCTC 1903 28 100.0 32 ............................ TCCGGTGGCAGGCAGGAGTAACGACAATGACC 1963 28 100.0 32 ............................ GCTGCAAGCGCTGGTGAAGAAAGCTGCGCAGA 2023 28 100.0 33 ............................ CTGTTCTGGCTTGTTCTCAACGATGGCGTCTGC 2084 28 100.0 32 ............................ AGGCCGAGCATGAACGCGGTCTTACCCATGGC 2144 28 100.0 32 ............................ TGGCTCGCTGCGCGCCGGCAGCGGCTGCCCGC 2204 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : AGACAATTGCATCGTCGTTGTCCTGTTGGGCTTTGTACGATTGTCGCAGGATCAGAGGGAGTTGTTCAGACCATCCTTAGCGGCCATCCTCGCGGGAAGGGAGGATGGCCTTCCTTTGCCTTATTGTTATGGATTCCAAGCACTTAGGTTATTGTTGGTCTTG # Right flank : TTGGTAGAGCAGATCGGCGAGCACCTGAGCTAGGGCCTGTTAACACTAATGGCCCGAGCGTTTAAACTATCGGGCATGGAGATCACGCCAGCACAATTTTCCCTAAGGATGGTCTGAACAACTCCCTCTGATCCTGCGACAATCGTACAAAGCCCAACAGGACAACGACGATGCAATTGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 80-1429 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIGX01000251.1 Xanthomonas theicola strain CFBP 4691 XthCFBP4691246, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 80 28 100.0 33 ............................ CAGCACCGAGGCGGCCAAGCTGATCACCCAGGC 141 28 100.0 32 ............................ TGGTCCACCGGCACGCCGTCCGGCCAGCGCTG 201 28 100.0 32 ............................ ATCGTGGACATGCTCCACAACCGGAACAAGGA 261 28 100.0 33 ............................ CGTATGTTCGTACCGACATCACGCAACCAGGCA 322 28 100.0 32 ............................ TACGACATGCTGCGCAAGCCGTTCAATGAGGT 382 28 100.0 32 ............................ CTTGTGATCGATCAGGACTTGCAACAAGTTGC 442 28 100.0 32 ............................ ATCGAAGCCCTGGCGAGGTCACCGCCCTGCGA 502 28 100.0 32 ............................ AATTTCGACAGCCGTACAGCTAAGCGGCTGTC 562 28 100.0 32 ............................ AGCACGCCCATGTACGTCGGCGCGCGCGGTAA 622 28 100.0 33 ............................ CTTGGGTGCGATATTAGTCTCAATTTCGTTCTT 683 28 100.0 32 ............................ TTGGCCCGGATGATGCCGGTGCGCCGCTGTGC 743 28 100.0 32 ............................ TGCCCGCGGCGCGCGGCGTGATCTACGTCCAC 803 28 100.0 32 ............................ GTTGCGGTGCCGATGAATCTGCCCAGCTTGCG 863 28 100.0 31 ............................ TTCGTGCAGGTCCAGCCATGAGCGGCTTCGA 922 28 100.0 32 ............................ CTCCGAGAAAGAGAAAGCAGCCATCGCTGCAA 982 28 100.0 32 ............................ TTGATCAGGGTCGTGGTCTTGTCCGGTTTCCA 1042 28 100.0 32 ............................ TGGATCATCGAGCACTTCCCGCCGCACCACAC 1102 28 100.0 32 ............................ GCAACCACGATCGGGCCAGGGTCATCACCAGC 1162 28 96.4 32 ......................A..... CATAGGCAACGATCTCGAAGCCGAACGAACGG 1222 28 96.4 32 ..........A................. AGGAAGATTCGGTTGACACCCGGCGACTGGTC 1282 28 100.0 32 ............................ GTACTGGCCGCCCTGGGCGGCGAGAAATCCGG 1342 28 96.4 32 .................T.......... AGGTCGAAACCCTCGAACACCTGCCGGATGTC 1402 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.5 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : GAAGCTGGATGCCATGTTCCTTGGATTCCTCAGCTTCGTCCTGGTCGTTGATGGGCTTCGGATGTGTTAACAGGCCCTAG # Right flank : TTGATCAACTGGTACTCGCGGGTCTTCATGAGGCTATCTCATTGAGAACCAGTTTTCCACCTGGTTGAGCCGCGACGAGTAAGTCGGCGTGACGTGCCAACGCACGTTGCGATGCGAGGTGAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16080-15003 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIGX01000070.1 Xanthomonas theicola strain CFBP 4691 XthCFBP4691069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 16079 31 100.0 35 ............................... AACTGGAACAGCCGGATCCACAAGAGCGCGCTGAT 16013 31 100.0 33 ............................... CGCACCGGCCGCACCGCCGCCCACGGGGTCCGT 15949 31 100.0 33 ............................... TACCGGTACAGGACCACCGCCCGCAAGTTACAA 15885 31 100.0 34 ............................... GGTCTGGACTGCCGTAACATAAAGTCACCGCGGG 15820 31 100.0 33 ............................... GCAGTGGCTGCGAAAGACCACGCATTACGGTCA 15756 31 100.0 35 ............................... AGGTCGGCCGTGACCGCACAGAAGTTGGCGCTCAG 15690 31 100.0 34 ............................... ATCGTCCGCGTCGGCTATGCGCCGGCCGCATCTT 15625 31 100.0 35 ............................... ACGTCGATCCGGTTGTACGCTTCGCACTCGTCCCA 15559 31 100.0 35 ............................... GCGACGAATGCCTGCCCACTGCTGACGTGCGTTGC 15493 31 100.0 35 ............................... TTCGCCGGCTGGAGCAAGGAGGTCGGCGGCATCGC 15427 31 100.0 34 ............................... TGGTGCAAGGCCGCACCCTCGTTGACGTATGCGA 15362 31 100.0 34 ............................... CGCAACGAGGACATGCTGTTCGAGTTCCCCGGCC 15297 31 100.0 36 ............................... CTTTGCCGCATTGACACTAGGCTCGACCTTGCTGGG 15230 31 100.0 34 ............................... CCGCTCAACGCCGACGGCACCATCCCTGCAAAAC 15165 31 100.0 35 ............................... ACGTCGGACATCGTCTCGTAGCCGATCACACGTGC 15099 31 96.8 35 ..........A.................... TCGACGACCAACGCAGACCTGATCAAAACCGCCCG 15033 31 83.9 0 ....T.......TC.....A.....C..... | ========== ====== ====== ====== =============================== ==================================== ================== 17 31 98.9 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGAAAAGGCCACTACGCCATGATGATTCTGGTCAGCTACGATGTCAGCACCAGCTCTCCCGGCGGCGAAAAAAGATTGCGCAAGGTCGCCAAAGCGTGCCGTGACCTTGGCCAGCGCGTGCAGTTCTCTGTCTTCGAAATCGAAGTAGAGCCTGCGCAATGGGCCGCATTGCGGCAGCGTCTATGCGACCTGATCGATCAGGATGTCGACAGCCTGCGCTTCTACCACCTCGGTGCAAGATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCGCTGATCTTCTGACGCGAACCGCAAGCGACTGGGGAAAGCCTGGTAGGTTCGCGGATCATCACAACACTTTGATTTTAAAGTAAAATATATCAACTCTTCCGTTCATTTCACGTGCACGGCAGCTCAATTCGATTGCGTCTTCGAAGGGTTCCGCACAAGTGCGGACTTTTTCTCAACACCTATCAGCACTTATGCTCAGGGGG # Right flank : GATGGAGTAGGCGCTCATGCTCATGCGATCGCAGTCTCCGAACCGCGCCCGCACAAGCCTATGGAGAAACCAATTTCCATCCATTCTTTCAAAAAAGGACGCAGCCTTGCGGCTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGGCGGCAGGCGCGATCCGTTACTGCGGCATCGCTTACTGATGCACGATGCGCGTCATTTGACTTCGAATTGCTGCGGGGTACCGGCCGGCTTGCCGTCCACGGTGACTTCGGCCTTGTACGTGCCGGCCGGCCAGCCCTTGGCATTGGTGAACTCGAAGTTGGTGGTCTCCGCCCCGGCAGTGGTCAGCGTCTCGCTACGCTCGCCAGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGATGCTGGTGTTGGTGGACGAGCCCTCGGTCTTCACCGAGACGATGATCTTGTCCTTGCTGGCCAGCGTGGTCAGCGGGGCCACGGTCTTGTCGGCGCCGGCGGTGTTGCCCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //