Array 1 453936-455428 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLV01000001.1 Salmonella sp. S056_01185 NODE_1_length_579602_cov_192.18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 453936 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 453997 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 454058 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 454119 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 454180 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 454241 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 454302 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 454363 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 454424 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 454485 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 454546 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 454607 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 454668 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 454729 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 454790 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 454851 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 454913 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 454974 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 455035 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 455096 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 455157 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 455218 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 455279 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 455340 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 455401 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 471560-473463 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLV01000001.1 Salmonella sp. S056_01185 NODE_1_length_579602_cov_192.18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 471560 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 471621 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 471682 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 471743 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 471804 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 471865 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 471926 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 471988 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 472049 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 472110 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 472171 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 472232 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 472293 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 472354 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 472415 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 472476 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 472537 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 472598 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 472659 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 472720 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 472782 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 472885 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 472946 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 473007 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 473068 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 473129 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 473190 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 473251 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 473312 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 473373 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 473434 29 96.6 0 A............................ | A [473460] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //