Array 1 7116-6778 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOH01000021.1 Ligilactobacillus ruminis strain BIOML-A14 scaffold21_size37305, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== ================================ ================== 7115 42 100.0 32 .......................................... TTGGGTCCGCGCACCTCGGTTTCGAAGTGCCG 7041 42 100.0 32 .......................................... TCGGTTCAGCGCGCCCCGTTTTGGGAGGCGGT 6967 42 90.5 32 .....................T.CC..A.............. CCAGGTCCGCTCACTCCAATTTCGGATCAGCC 6893 42 100.0 32 .......................................... CCAGGTCCGCTCACCCCAAGTTTGGAGTCGGC 6819 42 90.5 0 .A...................T.CC................. | ========== ====== ====== ====== ========================================== ================================ ================== 5 42 96.2 32 GGTAGACAAAAATCAGACATTCCAACCGGTTTTTGTCTACTT # Left flank : AAACCGATATTTTCCGTGATTTGTCCGTAAATTTTTGACCATTATGATGAGAATTTACGGACAGAAGCCTCTTTTCGGAGCATTTGTCCGTAAAATCGAGGTCGAAACCTCTAAAATCTTACGGACAAACAGCTGTTTTTGACCATTTTGTCCGTAATCGCCATTTTTGGAACAGTCCGTTTACGGACAGCATACCCATTTTCATCGATGCGTCCGTAAACAACAGTGATTTTGCCAAATGCATTGCTGCGCGGCAACTGCTCAATCGCTGCACCTGACCTCGGTTACGGGCAAAACGTTCTTTTTGGAATTTGCTTGTAATCTGAGATCACACTGCTTTGGCGAAGGTACCCGAGTAGAACATTTTTCCGATTTTGGAGGATTTTGTTCTACTCTCAGGGCAGCGCGGGCCGAATTTGTAGGCAGCGGTAGAACATTTTCTCAATTTTGGATGATTTTGTTCTACTCTCGGAGAAGCGCGCCCCGTTTTTGGAGGCGGC # Right flank : TCAGAGCCACGCACCCAAGTTTGCCCGTAATTATCAGAGATGCTGCAAAGATTACGTCAAATCAAAAACTCTTCCAAACAGTGTTACCAACGGCACTGCATTTCCCACGAAAAGAGACTTCATCCACCTTTTCCCCAAAACGCCAAAAAACGCAGGGCCGATTTGCCGCTGCGTCATCATCATAATCTTTATTTAAATTCGTCCGCCACCTGCTTGACTGACTTTCCTTCGCGCTTGGCACGCAGGATAACCTGACGAACCTGCTCATCCGTAAAGGCCTTTTCGTTGAGGCCTTGTGCTTTCAAATCTTTGCGGGCTTGTTTCACCTGAGCATCAGTCAGCTTGCTTTCGGCTGCGGAGGCAGCAGAATCAGAAATACCGCTGAAGACGTCTTGTTTGGTATTTTTTGAATACTTTTGCGACCTGGTCTTGTTCGCATCGGTCGAATCGTCATCGACGGTATAGCCAAGCGAACGAAGGATGCGGTCGTTGTATTCTTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAGACAAAAATCAGACATTCCAACCGGTTTTTGTCTACTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.90%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.60,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 24686-26054 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOH01000026.1 Ligilactobacillus ruminis strain BIOML-A14 scaffold26_size26092, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 24686 30 96.7 38 .....A........................ GTGGTTATCAGAGCACATGACTTCAAAGCCACAATCAC G,AG,T [24689,24692,24696] 24758 30 100.0 37 .............................. TCGAGCAGCAGCAACTCTTTCTTGCCCGGTGCCAGTC 24825 30 100.0 35 .............................. GTAGGCATTTTCCAGTTTACGTCTACCTATGTAGC 24890 30 100.0 36 .............................. GTCTAGCCAGTGACCATTATAGTTAATTGCATCCGT 24956 30 100.0 39 .............................. AGGAACCGCCTGCCGCAAACGAGGTTGCGCATCGCGCTT 25025 30 100.0 35 .............................. CTACCGCTCAGGTCAAGGGGCGTCAAGTCAACCGA 25090 30 100.0 36 .............................. TGGAATCGTAGGCACCGATGACGGCAAATTAATTCT 25156 30 100.0 36 .............................. GACATAATCGATTGCTTCGCTAAGATTGTCGGCAAT 25222 30 100.0 36 .............................. ACAAGTTGATGTTACCAGTTGCAAGGTTATGTCCGT 25288 30 100.0 35 .............................. GCATAGTAATCCTGCTTATAGTGCATATGAAGTCA 25353 30 100.0 38 .............................. TACGATATAGCCGGTTATGTTGTTATTTAACTAGTCTG 25421 30 100.0 37 .............................. CACAGGAAGATGATTTATATTTTCGTAAGGCTTATTA 25488 30 100.0 39 .............................. AATAGCAGGTTATTCTGTTACAAACAGTCTTGTTTTCAA 25557 30 100.0 36 .............................. GAAAATGGTTACGAAACTCATTCTCAATGGGGCTTA 25623 30 100.0 36 .............................. ACTCAACGTCACGAGAACACAGGTCATAACCGTATC 25689 30 100.0 37 .............................. ATTCAGCAGTTCTTTTTCCTCATCTTCAAGCTTGTTA 25756 30 100.0 39 .............................. CGGCACTCGCCTTGTTGGCGTCGATTGCCTTACGTATAT 25825 30 100.0 36 .............................. CATATCAGCAATCCGAATTTGATTTTCGTTGGTCAG 25891 30 100.0 37 .............................. TAGCATTCGTGTTATAGTCTGCATCATCATCATACCA 25958 30 100.0 37 .............................. TAATACCGTTCTCATTAAAACCATAATAATACGCCTT 26025 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 21 30 99.8 37 ATTTACATTCCTCATCAGTTAGATAAAAAC # Left flank : TCTCTTCTTGAGCTTTCGCAACACATTTCGCTCGGAGAACTGATCCACATCTACAAGCTCATGAGCAAGCGCAACCGCAAAGAAATCGCATCCATATATGACTGCAGCGCAAACGAGCTCATCAGTTGGATGGAATGCATCGCGCTTTACCGCAACTGCTGCTGTCACAACGGAAACCTGATCGATATCAAAATCGAAACAAGGCCCGTAACGCCCCGATCATATTCCAAATATCTTTTTCGCATGAAAAATACAGAGACGACAACGAACAGGTTCGCACTGGGCTGCGTTGTCATACTGCATTTGGCAAAAACAATCAACGTTGAAAAAGAAGAAACGGATGCGTTGAAACAGGCCATCTTAGCCCTTTCAAACGACAAGACGACGCTTGAATCCTATGGGTTCGTCAGTCGGGAAGGATTTGAGGGGGCGTTTGGGGAATGAGGCTAAAAACGATTTAAATTTATATGATTCCGTTGTTTTATTTTTTTATCGTCACC # Right flank : CAAGGTTACATTCTTGAAAAGCGTCAACAATGTAGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCTCATCAGTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 788-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKOH01000039.1 Ligilactobacillus ruminis strain BIOML-A14 scaffold39_size11032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 787 30 100.0 36 .............................. TAAAGTCATTGATTATGTATGCACAATGATCTATGA 721 30 100.0 35 .............................. AAAAAATCGCAAAAAACGGTAGTCAGTCTGTCTTT 656 30 100.0 37 .............................. ACATTTGCGACGTGGCCACTGGTCGCATTTTTGGACC 589 30 100.0 36 .............................. ATCCACTCGGTCAAGGGATAGGCTCTTTTAGTAATA 523 30 100.0 39 .............................. TCTTCTCGAAGGCTTGAGCAACGATTTTAGCTAACTCAT 454 30 100.0 35 .............................. AGGTGTACACAAAAAACAAAAGTTTACGCTAAATG 389 30 100.0 36 .............................. GAAGTCTGCTTGGCTTGTGCCGACGTCTGCAGTATC 323 30 100.0 37 .............................. TTATGCCCCAGCTAAAAGCGACGCTTGAAAATGGCGT 256 30 100.0 37 .............................. TATGCGCTAAAGTATGTTGGCAACGATACGAATATTT 189 30 100.0 37 .............................. GGTTCAATGGGTTCTTCACATTTTGCAAGCAATGTAT 122 30 100.0 37 .............................. AGCGTTTACTATGGCAATCCTTATGACGGGATTATTA 55 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 12 30 100.0 37 GTTTTTATCTAACTGATGAGGAATGTAAAT # Left flank : GTTGAATATTCTCCTTTTAAAATTTGGTGGTGATAAGTTGTATGTAATTTTAGTTTATGATATAAGCGTTGAAAATAATGGGTCCAGGCGTATGAGAAGAGTTTTTAAAATATGTAAAAAATATCTTACTCATATCCAGAACTCTGTTTTTGAGGGAGAACTAACAGTTGCAAAATTAAATAAATTAAAATCAGAATTGTCTAAATGGATAGATAAAGATTTAGATTCAATAATTATTTTTAAAAGCAGAAGTAACAAATGGTTGATCAAAGAGTTTTGGGGTATGGACACATCCGCAGATACTTCAAATTTCTTCTAATATATCTGTCTATGTGTAATAAATAAATTATTACGGTGTTTCGACAGATTCTATAATTACTGATACGAAAGCATCTACTGATGTTCGAGCATATTATATATCAAATAAGCTTCAAATTTTTATTGCATTGACAGAAATACGCTTAAGATATATAGTGGTGTTAGTATTTTCAAGCTATGGA # Right flank : TACCTACATTGTTGACGCTTTTCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTGATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //