Array 1 102732-101705 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRKQ01000002.1 Lactobacillus johnsonii strain Q1-7 NODE_2_length_554798_cov_1081.787709, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 102731 36 100.0 30 .................................... GCAAGCCATCAAAATATGATGAGCTAAAGA 102665 36 100.0 30 .................................... GGAAGTCAGACACATTAGCCATTCCTATTC 102599 36 100.0 30 .................................... TAGGAATGAGTCGGACGAGTTATAGCAAAA 102533 36 100.0 30 .................................... TGCTTTAGCAGGTTCACCATTCGTTAGATA 102467 36 100.0 30 .................................... CAAGAGTGCCCTCTATACTGCTTATCCAGT 102401 36 100.0 30 .................................... GGAAGAATTGGGAGAAAATGCAACTGTGTT 102335 36 100.0 30 .................................... TAGTAGGTTAATCCTTGTACGTGGTACAGG 102269 36 100.0 30 .................................... CAAAATAACTCTCAAAGTTTCAATATAGCT 102203 36 100.0 30 .................................... CTCCTTCCTAACGGAATGGAGCATATCATA 102137 36 100.0 30 .................................... ATTGATTTAGTTGTTGACGCTGACCATTTG 102071 36 100.0 30 .................................... AAAGTGATACTTTTTGGCTTGTTGGAAACT 102005 36 100.0 32 .................................... TTTTTTGTGTCTTTTTTTTTGCATAGTTCGTA 101937 36 100.0 30 .................................... TTTCATCAATCATCTTTCTCGCCTCCTTAA 101871 36 100.0 30 .................................... TGACCACTTTCTTTAGCGATGTCTAATCTA 101805 36 100.0 30 .................................... ACTACATCGCCAATGACGGTGTGTCCCATT 101739 35 77.8 0 ..........A....C.......AT.T-....CT.. | ========== ====== ====== ====== ==================================== ================================ ================== 16 36 98.6 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : CTAAAAATAATTTAGATAAATATATGCCTCTAATTATAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCATTATTTTTAGAAGATTTACCGCTAGAAATTGATTTTAGTGAGGATTTAAAGAAGTTTCTAAAATTAGAGAATTTGCATTTGGATTCTAAGTTTTTAAAAGGGCCCTATGCTATAATTGAATCGATCTTAAGAATCCATCAAACATGTAATTTGAAGACTGTGCCAGTTGTCTGTAATGTCGCTCATTATTTAGATAGCACACAGTTAAACATGTTGAACAATTTGCTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTAAGGAGGGTCTGGTTTATCCGAAAGATGCTGATTACTTCTACATTGATGGGGACCTTGTTGATTGGTACTAACAGCTATCATTAAAGGATAATTATAAATTATCG # Right flank : TTATAAAAGTCATTAGTATTAACTGAAAATATTGATATTAATGACTTTTTCTTTTATTGAATTTGGTAATCTTATCTAAATTACCATTTTCTTTTGCTTCTAAGTAATTAAAATATTCTTCAGAGAACTTACCGTCTGTTAGCCAGACCATGTTATCGTTCCTTTTGGTTTTATTTTTGGTTCAAAATACACACCTTCAATAATTTAACTATTATTAATTAAAATTTCTAGTTTTAAAAGGACAATAGAACAGAAAAAATGAGAAATCTAAGATTTAAAAAGGCTGATTTTCTATTCATTAGAACAACATATCCTAGTTTATTTATTAAATTTAAGAATAGTTATGAAGAAAATGGAATTGTTAATGTCCCTATGCAAAATGAAAGGGATTATGATTATTACTTTGATGTAGTATATAGCTACCTCATTGAATGAAACGGGGGAGTTAAATGAGGACGGTCTAAGACTTGAGGCTGCGTGGGATTATGCAGACTGGTCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //