Array 1 461927-460217 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWJI01000002.1 Yersinia intermedia strain R148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 461926 28 100.0 32 ............................ ACGCACCAGCAGCCCTTTGCTGTCTTCTTCAA 461866 28 100.0 32 ............................ TGTGGTGCCAAGTCCCATCGTAGCCGTAACGG 461806 28 96.4 32 .......A.................... AATACAGATGGTAAATCATCAGTTGTTTTTTC 461746 28 100.0 32 ............................ GTATCGACATCATCGTCGTTGAACACCCGCAC 461686 28 100.0 32 ............................ ACTGCAATAACATTTCTTCCATACTGACTTTA 461626 28 100.0 33 ............................ CTGAAACGCCGATGCTAATTGACTGAAACCTGA 461565 28 100.0 32 ............................ GTTAGATAGATTCGCTCTAATAGAGTCACTAC 461505 28 100.0 32 ............................ GCAACGCCCAAAGCCGTTAAAAATGCAGCCTT 461445 28 100.0 32 ............................ TATTTGTGGTGCCGGATTATCTGGCTTGGCTG 461385 28 100.0 32 ............................ AACATCGCGACCTATTTCAGTAGCCAATTCGG 461325 28 100.0 32 ............................ TTCATATTCGTGAATAAGGTCATTAATACGGC 461265 28 100.0 32 ............................ TCTGCAGGCGAGTTACCACAGCCACTTACGCC 461205 28 100.0 32 ............................ ACTGGCGCTAAGTCATGGCGGCTCAAGTACAG 461145 28 100.0 32 ............................ GTCACAAGAGTACACGCTGATGCAAAAGTAAG 461085 28 100.0 32 ............................ GTAATACCGAATACTGCCTCGCAAACGAATTT 461025 28 100.0 32 ............................ AAGGCGAAAACCCGGCTCAAGTAGAACGGGAC 460965 28 100.0 32 ............................ AATCGAAATTTGAGAGGGTAGCTTGCGTTGGC 460905 28 100.0 32 ............................ GTAATGTTCTGTATCGCGAACCCCTGTTCAGA 460845 28 100.0 32 ............................ TAAGTGGGCTTCTTTACCCCGGATCACCGACC 460785 28 100.0 32 ............................ TGATAGAAACCCAATCTTAATAGACGTGGCTC 460725 28 100.0 32 ............................ GCAGGAACGAATTTATCATTTTCAGATGTTAA 460665 28 100.0 32 ............................ TCTATCAATGAACTTGCCAAAGCTCACTAATA 460605 28 96.4 32 ..A......................... AGTTCTTCCGGTACACGTTTCACCGCAACTGG 460545 28 96.4 32 ..A......................... ATACCGGCAAGTTAAATTGCGGTAGCTTATCC 460485 28 96.4 33 ..A......................... CGCGCCCGCCGTGAGCTATTTTGTACCGCGACG 460424 28 100.0 32 ............................ TTGTGCAACGTCTACACCTATAGCGCTCATAT 460364 28 100.0 32 ............................ TTCCCCTTGTCACCGAACCGATTGGCCCACTC 460304 28 100.0 32 ............................ TAATGCGGCAACCGCTGCACCAACAATCTGCG 460244 28 92.9 0 ...........T........T....... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.3 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCAAGACATCGATAGTCTGATGCAGCAAAACTGGTTACAAGGTATGCGTGACTATGTCCGATGTAGTGCGGTATTGCCGGTGCCTGAGGCAGTACAATACCGAACGGTGAGGCGAGTTCAGGCAAAAACCGCCCATAACAAGCGGCAGAGATCGATTGCTAAAGGGTGGCTAACTGAACAGCAGGCATTTGAACAAATACCTGACACTCAACAGAAATCTCTCAGGTTGCCTTTTATTCAACTGCGTAGCCTTTCGAACGGTAATACGATGCGAATTTATATTCAGCATGGTGAATTGCAGGAACAAGCTCAGTTAGGAAGTTTTTCTGCCTACGGCCTAAGTAGCAGTACCACCATACCTTGGTTTTAACCCTTTTTTTTCGGCCATTGCTAACTTGTTGTTTTATAAAAGTGTAATGGAAGGGGAAGAAAAAAGGGATTTTCAGTCAGTATCCTGATTTATGTTTAATAAACAGGATGATGACATATTTTCATTATA # Right flank : ATCTTCTATGTCGAGGACGGTGCCGATCCATTGTTCGCTACCATAGAGATGTAACGCCATTGCAGCGGCATACATGTGAGGACAAAGCATTCCACATCCTCATATCGTATAAACAACCCCCCTCTATTTACTGGAAAATTTTCAACGCAGGCAGAATTAAAAAACGGTGAATACCTGCATCAAGAAATATCCCTATACCGTGATCACAAGCTTTCTCAACACAAATAAATCATTGCGATCCTGCTCGCATAGTGGACAATACTTAACCATTAGTAATGTTTATATCAACTAAATCAATAATTTTAGTTAAAGCAAGGGATGGGCTATGGACAGGAATACTCAGGGATTTGCATCATACTGGCGTAATACCTTAGCAGATGCTGAGTCCGGTAAAGGTGCGTTTGAACGTAAAGACGAAGACTCATTCACCCGATGGATGGACACCACTAAGGGGAGGTTGAATGAGGAGACTGTTCACGCGTTCTTCAAGGATGAAGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //