Array 1 4085-4789 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUGG01000067.1 Porphyromonas gingivalis strain 13_1 isolate 13_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4085 37 100.0 35 ..................................... GGGAGCTTCTTCCCCACGAACAGCAGGGAGAAAAA 4157 37 100.0 37 ..................................... AAGAGGCACAGGCGATCCTAAAAGAGATCTACTCAAT 4231 37 100.0 37 ..................................... ATCAAAGTTATCACCTACAAAAAGGGCAGTTCTTATC 4305 37 100.0 40 ..................................... AGATACAAGAAGCACGATCGCTGCTAGCAAACTGGGATAC 4382 37 100.0 37 ..................................... AACCTCCTAAGTTGAGAATTAATCCTGCTAAAGAAAC 4456 37 100.0 42 ..................................... AAGAACTTCCATGAAGGAAGTAACCAACCCTTGGGTGTTAGA 4535 37 100.0 37 ..................................... CAGGTCTGAAAAGATTGACTTCAATAATATGATTGAG 4609 37 100.0 36 ..................................... TGCTTTAGGAAGATGCAAGGAAGATATCAAGAGATA 4682 37 100.0 34 ..................................... AAAGAAGATGTGTTCTACTTGGAGGTAGAATATA 4753 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 10 37 100.0 37 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : AAAACGACCGAACTTTCCTTTTCGGACAAATCCGCCTCTCCGAAGTTCACAGACCGGAAATGCTCGGATTGCGGAGTGTGTTTTCGGGAAAAGCGGCGCGAGAATTTTTTCGCTGTGGCGCGAGAATTTTTCACTTCCCGAACCAAAACGAAAATGTTCCCGCGCCACGTTTTTCAGAGCATCGATAGTCTTCTCCAAAGAGTCCGTTATCCACTTTTATAAGACCGTTGCACAACTCGCCTGTGCGTTTGGCATCCTCGTAGATGTGTGAATACGAAGGAGGTTTTGAGTTGTTTGCTGTTGTTTTTCTATCGGTTGGACTCTCCCTTTACTCCCCATTCGGAGGTTTAAGCCTCCGAATGGGGAGATTTTTCGTCTATTTCACGCCATAGAGCACAGAAGCCCGGGCATACGCTTAAGATTGTAGGCCATCGCTTCCAGAACACTCTGTGTATGTATAGTGAGAAAAAAACAAAAAACCAGTGCATCCCCTTGTTCCC # Right flank : GTACTTGAGCGACTGCAAGTTACGAATAATCCCAAACGTAACGCATTGACAGAGAACGATTCTATTTTTTTCGAAAATACAAGTTGAGAAATGCAGCTACAACACTATTTTTGCAGTTGAGCTGATTATATCTCATTGATATACAATCAAATTACCTGATTTTCCGTTTTCGAAAATAAGAAAGTGGGAGCCTTCGTTTTTTAGATTTTCGAAAAAGAGAGAAAGACACCGTTTGATAATCAAACACTTACAAATAGCGAAAAGCCTCTATTTTTCGAAAATAAAAGTCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACAGGAGAAAAGAGTTGTTCTTGCAACCGACTGATAATCAATACGTCAAAGAGCGATATGTGATTCGATTTTTTTCGAAAAACTAAACCACAATACTTTTCCTTTTTCTCCGGCTCTTAGGGAGGGTCGGATGTCCGCTCATCCAAGCAGCGGTGTAACAATGCTGACAGAGAGGAAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 65222-65448 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUGG01000012.1 Porphyromonas gingivalis strain 13_1 isolate 13_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 65222 30 100.0 36 .............................. TTGAGCCGTTTCCATCGTGGCAGGTAATAATTCCTC 65288 30 100.0 34 .............................. TCGAAGGCGTAGACATGCTGCAAAACCGCTACAA 65352 30 100.0 37 .............................. CCGTATAGTGGGACAACACATAGAACATCGGGAGAAA 65419 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 36 GATCTAAATGGACTATCGTGCTGATGTAAC # Left flank : AGTTCCACTCCTTCTTTGATGGCAGCAGGCTCCGACATGTCGCCCAGATTGCTGAGGGCGCGCTCGAAGTCGTCGATCACGGGCAGCAGATCCACGAGCACCTTTTCTCCTCCATTGCGGATAAGTTCGCTCTTTTCCTTGAGTGTCCGTTTGCGGTAGTTGTCATACTCTGCCATCAAACGCAGATGGGTGTCGTTAAGAGCAGCCAACTGAGCCGTGAGCTGCTCCACCGGGTCTGCCACCTTGTCGTTCTCTTCGGCTGCGGGGGCACTATCTATATCATTTTCGTGACTGTTTGTCAGTTGTTCGTCTCTTTCGGTATCCTGTTCGGGCTGAGGCGTTCGTTCGCAATTGTTTTTTTGCTTGTTCATTATATTGCTTTCACTTTTTTATTTTATTCATTATCAGTATGTTGATGCGGTCGAAAAGGGTTGTTCGCCTTTTATCGACACAAATGTACACTGTATTAACTACAAAAACCGCTCCACTCTATGGCACCG # Right flank : CATCAGAAAACAAATCCATTGGCCTTTTCTTGCGTCGAACTGATGTTAATTAACGTGAGTTCGATATAAAGGAATGGCACAACACATTGGTTATTAGTGTGTTTTATTTTCCACACAGTGTTTTTCAGGAACTTATATTGCTTTCAGATGGCTTTTTATCTACATCTGAAGCCCAATGACTTAGAAGCCGCCCCTTCTTCCCGATCATTATGCAAGGAGAAAATCACAAAAGAGTATGATTTACAGCTACTTGTTATTTTTATGGTATGTTCGCTTAGATCGAACTGGCGTTAATTATGTCGAAATATTTGACCGATTCCGAGCATCAACTTTTTCGGTGCACGTCACGTTTTCAAGAAGGACAAAAGAGAAAAATCTTGCGTATAAACCAACCCGTGCAATCTGATTTGGCCGGAACTTTAGGATGGATCGTAATATCGTTTCGCTAAAATAATTGGTACAGACCGCTTATTTTTGTCTCATGATCAAATCTCCCCAAC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTAAATGGACTATCGTGCTGATGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 165149-164717 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUGG01000012.1 Porphyromonas gingivalis strain 13_1 isolate 13_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 165148 36 97.2 30 ................A................... CGATAGTGAAAAGACTACTGGGGTTGTTTA 165082 36 97.2 30 ................A................... AAGGTCTCCAAAGCACCGCTACCGCGCGGA 165016 36 100.0 30 .................................... GCGTTAGATATTCAGGCTGGGAGCCGAGCA 164950 36 100.0 30 .................................... TCTTCAACTTATGGTCAAGGATATGTATCT 164884 36 100.0 30 .................................... AAAGATAGAATCCGAGTTTTATGTGAAGCT 164818 36 100.0 30 .................................... TATAATAACGTCTTTTTCTCCTAAATCTCA 164752 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.2 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATTTTGTATACAAATCGTTTTTGATTTATATATAAATCGATTGCGATAAATATATAGATTGCAAGCCGATTTGATATAAATCGGGCAACTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCAAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGACTCTCAGGCTCTACCGCTCATACAGCAGGTTTGCATCAGCCATACGCAACGCCGGCATAAACCACACAAGCCGAACGAAACCGGTCGAATAAAAATGCAGGGAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGATACAAATTCGCTGAAGAAGGGAGCACCTCGTTCGCCCGCAAATGTAGTGAAAAAGCCCCAACGCGGAAGAATCCCCACACTACACCCTCCCTCTACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAACCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGCTCCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4808-5842 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUGG01000043.1 Porphyromonas gingivalis strain 13_1 isolate 13_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 4808 46 100.0 30 .............................................. GCTTACCTTCATACAGACACACCCAATCCA 4884 46 100.0 30 .............................................. GATAAGAACTATCAAGAAACTATATTCTCT 4960 46 100.0 30 .............................................. GAATAAAGGTTTTGAAGCAGCTGTATAAGA 5036 46 100.0 30 .............................................. AAGAAACGATAGCAGAATTGACACACTATG 5112 46 100.0 30 .............................................. AACGAGTGAAAAAACCCTCTTTTATTATAT 5188 46 100.0 30 .............................................. ATATAATAAAAGACAACTTTTTTACTCGTT 5264 46 100.0 30 .............................................. TTCTATCGTACTTATTACGATGAAGAAAGA 5340 46 100.0 30 .............................................. ATATCTCGCTAAATCTATTGGTTTTCATCA 5416 46 100.0 31 .............................................. TTAGTTTTCATCATAGTTTAGAAGATATATA 5493 46 100.0 30 .............................................. TTTTATCGTACTTATTACGATGATGAAAGA 5569 46 100.0 30 .............................................. ACTGTTTAATTGATTTATTTATACAAGATT 5645 46 100.0 30 .............................................. TCAACGAGATATGCGAGTACCACCTGCAAG 5721 46 100.0 30 .............................................. ATACAAGATCTTCATCCGACGGGGCGGAAC 5797 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 14 46 100.0 30 ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC # Left flank : AAATGAAAACGATTTGTATACAAATTGAAAACGCTTTATATACAGATCGCTGTACGGCTTGTTTTAAGTGGAATTTCGATCTATGGCAGTTCCTTTTCCCTCCACTTTTACCTTGCTTTTCTCCTCTCTACAGATACTTATTTGGAATCGTTCCAAACTCGTCTTCGTTGTTGAAAACTTTTTTGGCGCATGATTTTTGAGCAGATTATTATTTTCGTGGTCTCCCTTTTTTCACAGGGAATAGCTTTCAGATTTAGTAATGTTGTTGCAACGCACAGCCAGCGAAATCTTTTATGATTAGTTTCTTGAGCTCTTGCAGATTCATAAACTTTGTTTATCTCTGTGGCAGATAAAGCTGGTTGGCGATGTGAGTACGGGGGAGTGTTATCCTGTTTCCTTGCCGATCAGCCTTTATTTTTTTCGGGGAATGGCCCTTGTACAAAGTACGGCTCCTCCCATACCCTTCCCCCTTTGCTGATAACCTCAAACCCGAATCGGTA # Right flank : CAGAATCCCCGTAATCACCTGTAATACAGGACATGGAGGGTGGTTGTGAGTAAAAAAAAAACAACTGTGCGTAACTGAAAAGCCGAGAGAAATCTCGGCTTTTTAATTTCTATGCCCCAGACGAAAAGCACTAATTCCACAAAAGATGATAGAATATATTTAAAAAAGTTCAAGCTGGAGGGGTGGCTGATAATACTCTCTTCCTTTCCCACAAATGATCTCCATAGCTGAAAATTGTTTGTCTGTGATTGTCATCAAACCTATTTTGCCCTTTTCAGGAATAGCAGAACGGACCCGTCGGCAATGTGTTTCTGCATTCTCTCTACTTGCACAGTGTCTGATATAGATAGAAAATTGGAACATCTCGAAACCATCTTTAATCAGATTTTTCCGAAAGATTGCTGCACGTTTCCTGTCGGCTGCAGTTTCCGTAGGTAGATCGAAGAATACCATTACCCACATACTTCTATAGGCTGAATATCTGGATCTGTAATGACTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 26873-20778 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUGG01000038.1 Porphyromonas gingivalis strain 13_1 isolate 13_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 26872 30 96.7 36 A............................. TTCCCTGAGCCGGAAGTCCTCGTAGTCTCGACCGAC 26806 30 96.7 37 A............................. ACATAGTCGGTGAGAAGAAAGAAAAAGAAACTGTTTT 26739 30 100.0 36 .............................. TGGCAAAAAAGCAGAAAAAAAAGGCCTTTTCCTTTC 26673 30 100.0 36 .............................. CTCCTCGATTCGCTTTTCTGGGATATGCTCACCGTT 26607 30 100.0 38 .............................. AGTGGATACTTTTTCATGACTTGATGAATAGCACCCAA 26539 30 100.0 36 .............................. GGAGCTGCGCTGGAAATACAGCCTTGTCGAGCCGGT 26473 30 100.0 36 .............................. ACAACGCGGAGATAACCGTATCGCTGGAAGAACGGT 26407 30 100.0 34 .............................. TCAGGCTTCTGCCACGTCTGAGCCGGGGCAGTAT 26343 30 100.0 36 .............................. GACTTGTGCCCACCCACTTGATAGACGGGCTGAGAT 26277 30 100.0 36 .............................. TTTCGCCTTGCTCCTGAAAGCCCTTTACCTCCGTCT 26211 30 100.0 36 .............................. GCCGCAGTTCGACTGTAAGCTCTGCAATAGGCTCGT 26145 30 100.0 36 .............................. TAAGAGCTCCTGTTTTAATAGTCTCAAAAGAATTCA 26079 30 100.0 35 .............................. TCGGCGGGATCGGTGGATTTGCCCTTGCCGCGAGG 26014 30 100.0 36 .............................. ATCCGGTCAGCCACGACAGTACTGCAGATGCAGTAC 25948 30 100.0 36 .............................. GCAAGACTTTCAGTTGAGACTGGAAAGGGGCAAGTA 25882 30 100.0 36 .............................. GGAGTCCATCGGTCTCTGCATCGGCAGAGAAGGTTA 25816 30 100.0 37 .............................. TTCAGCAACTCAACGAAACGAATGTGATCCAAGGCGA 25749 30 100.0 36 .............................. ACGCGGCGCATGTCGTACTGATACGTTTCTGCCTCG 25683 30 100.0 36 .............................. GCATGGCGTCCACCGCCCCGGGCATCACCTCCCCCA 25617 30 100.0 36 .............................. CGCCTCCTCCTCGGGCGTCCTCTCTCTGAAGTAGCC 25551 30 100.0 36 .............................. TGCCTTGAGTTCCCCGTACACCGCGCTATACCACAG 25485 30 100.0 37 .............................. CTGCTCTCAATTGCCGTTGACGACGAGGAGTATATAA 25418 30 100.0 34 .............................. GGGTGTTGAAAATTTAGTAACAACTAAGGTACCT 25354 30 100.0 38 .............................. TTGTTCTCTAGCTTAGTCATTCATAATTAAGACTTATG 25286 30 100.0 35 .............................. CCCTCAACGACGTTAAGCGTCGGTGTCCGGTTCAA 25221 30 100.0 37 .............................. ACCAATACGCACCGGGCTCTGTTTCCCAATACTTCAT 25154 30 100.0 36 .............................. CATACCGACCCACCGCCTCCAAACGCTACGTGCAAG 25088 30 100.0 36 .............................. TTGTGCCGTCAGAGGGTGCCCAAGAATTGCCCCCCA 25022 30 100.0 37 .............................. GAAAGCGACCGAACACTTGTTCGATAGTCTTGCTTTG 24955 30 100.0 36 .............................. CTAAACCACCTATCGTCAGCTCGACAGGTGCAGCTG 24889 30 100.0 36 .............................. TACGTCCTTGTCGCCGAAAAGGCCTACTACCTTCAT 24823 30 100.0 36 .............................. CTCCAAGTAGTGCAGGCCTCCAAGCGTTATTTGCGA 24757 30 100.0 36 .............................. TAGTCTTAGACTATATGCCATCTCTGCCTCGGGAAA 24691 30 100.0 36 .............................. TCGCTATACAAACGCAAGCGATCGTTCATCTTCCCA 24625 30 100.0 36 .............................. TATTCAGAATAATTCTCAGAACAGCATTCTTCTGCA 24559 30 100.0 36 .............................. CGAGCTGTCCCGAGCGCAGAGCATTTTCTGCGTCTG 24493 30 100.0 35 .............................. TTGCCGGAGAACTTCGAAGAAACATCTTCTTCTTC 24428 30 100.0 37 .............................. ACAACGTAAAACACTGCAAATATACAATAATATCGAT 24361 30 100.0 36 .............................. TATTGGCCTGATTGATGGCTCTGTTCGTGATGGGGA 24295 30 100.0 36 .............................. CGGAAGATTCCGTTGCAAACTTCGTGAATCAGCCTT 24229 30 100.0 36 .............................. TCTTGAGCGCTATATTGTACCCTGTGTAGCTGCCGG 24163 30 100.0 36 .............................. CCGGTGGCTTTCGTGCGCTGCTTTTGGTAAGATTTC 24097 30 100.0 35 .............................. TTCCCCCATTTCTCCCCTCTTTGCGGCGGAAATGA 24032 30 100.0 37 .............................. CCCGTCCGCCGAGAACAAAGCAAAACGAGAAAAAGAA 23965 30 100.0 36 .............................. CAAGGAAGAACCTCTATGAAGGAGGTAGATAATCCT 23899 30 100.0 35 .............................. AAGAAAATGATCTACGATAGATTTAACTATTATAG 23834 30 100.0 36 .............................. CTTGTCCACGCGGACGCGGACGCTCATCTTGTCGGT 23768 30 100.0 37 .............................. GAAGATGCCGCCGCGCAGGGGATCGAATTCGACATCA 23701 30 100.0 36 .............................. CTCAGATAAACAAGGTTGTCGAGGAAGGCAGACGCT 23635 30 100.0 36 .............................. ACCGATATGCACAAGAATCCGACACGGCCGAACAAG 23569 30 100.0 34 .............................. TCGGTACGCAACTACAGAAGCGGCGCACCGAGCT 23505 30 100.0 34 .............................. CACCGTCTTCTCCACTGATCTTTGAGCTTCCGAT 23441 30 100.0 37 .............................. TGCCTTACGCTCTTCTTGCAAATTCGAAATCTTGTCA 23374 30 100.0 36 .............................. TTGAATGTATAATGTTTAGCGAGCAGCAGAACGTGT 23308 30 100.0 36 .............................. TAGGTGTTGTGTTGTGAAAGGGCTGGAGTTCGGAGA 23242 30 100.0 36 .............................. ACAAGTTCCGTGACATTCTTTAACCACAACCTAGAG 23176 30 100.0 36 .............................. TTGCTGTTTCGAACTTAGGAATGTAGAAGTCTAATT 23110 30 100.0 35 .............................. CATCCATATTTTCGACAAGCAAAGTTTCCCCGAAA 23045 30 100.0 36 .............................. GAAAACGCCCGGCAGCCCGTACTCCTGTCTAAGTGC 22979 30 100.0 36 .............................. GATATAATATTTACACCCTCTATGTCTTCACCGTCT 22913 30 100.0 37 .............................. CTTCAATTGCGTCTGCCTCGTCTGCATACAGGACGTT 22846 30 100.0 37 .............................. AAAGAAACAAATATTGGTATTGGAATGGTTCAGCAGA 22779 30 100.0 35 .............................. GGTGGTACCGGCACCGACAAAAGAACAGATCGAAA 22714 30 100.0 35 .............................. ATGTCGCATGTCACCCCAGACGGCCGCACACCCGA 22649 30 100.0 37 .............................. TGGATACAGAAATAGCTTTTACATAGCCCGACTCTGT 22582 30 100.0 35 .............................. GTTAGGGGGTTGTCTTTTGCGATAAGAGGCATACG 22517 30 100.0 36 .............................. AAGCCTCCAGCTTAGAAGCCGACAACCTGTGCTCGA 22451 30 100.0 36 .............................. CCGGCTACATGGTTGCAACCGACACCCATGCCGGGG 22385 30 100.0 34 .............................. CCATATATTATTCCGTTTTATTATTAGTATCCGA 22321 30 100.0 36 .............................. CGGTGCGGTGGATGAACTCCTTTTTGATCATTTCGT 22255 30 100.0 36 .............................. CGGCGGAAAGCAGGTCGAGCGCGTCGATGAAGCGGA 22189 30 100.0 36 .............................. TTTCATTCTTTAGAAACCTTCTGCGAGAGTCTATTC 22123 30 100.0 34 .............................. GTAAGCGGGCTGAGGGTGTTTTACCTCAGAAAAT 22059 30 100.0 36 .............................. CTATGAAATCCCAGAGAAAGCTCACAACAATTACTC 21993 30 100.0 36 .............................. AAGATGCGTTGGAGGGGATTCAGCGTATATTAAGTC 21927 30 100.0 36 .............................. TCTTTGTTTCTTTCTTTTTTGAGAATAGCTGATGAG 21861 30 100.0 36 .............................. TGTTGGACCTGCTCTATCAAAGCCAACCATGCTATC 21795 30 100.0 37 .............................. TATTTCTTAAAATCACAGAATCTTTGAAGTATTTAAT 21728 30 100.0 36 .............................. AGTGTTACAGCCTATTCTGTAGCCTACTCAAAAGGG 21662 30 100.0 36 .............................. CTTATTGCCGAACCTTAACCGAAGTAGATCAAGCAA 21596 30 100.0 36 .............................. TTTATAATATCTTGGATGAACTTTTTTATTTCCTGT 21530 30 100.0 37 .............................. CTGAAACATAAAAAAATCGCGTTTTTTTGTTGCGCGC 21463 30 100.0 36 .............................. TGCGGAGAACCTTGTCGCTGTCTTGATCGCGCTTGT 21397 30 100.0 35 .............................. TTGCACATACAGCCCGAGCACCTCTCTTTTTATCG 21332 30 100.0 35 .............................. GCAAGCCTCCACGGTAGCACTGTCCCAAGCCTCCA 21267 30 100.0 36 .............................. AGTTCTCGGCCGCCGCCGAATCGGTGAAGATGCCGA 21201 30 100.0 35 .............................. TTGCACATACAGCCCGAGCACCTCTCTTTTTATCG 21136 30 100.0 36 .............................. GCTGCACGCATACTATCGTAGTGACAGCACGCGCGC 21070 30 100.0 36 .............................. TGAATAGCTGCAAATACCGTGGCTATTTCGCCGACT 21004 30 100.0 36 .............................. CTTTTTATCGTGGTATTTGCGTAGTCAGCTATTGAC 20938 30 100.0 36 .............................. GAAAACACCGCCCCCGAGTTATAATTATTTAACAAA 20872 30 100.0 35 .............................. TCTTTGCGCCTCTATGCCGTCTCTGCCTCTGGAAA 20807 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 93 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAGTATTATGCTGTTTTTAATGCTCAAATATACGAAATAACTCCCTATTATACAATGAATTAACAAGCAAAATACACGCTAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATA # Right flank : TCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGAGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGACTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //