Array 1 58801-63412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGN010000011.1 Clostridium perfringens strain P6 NODE_11_length_66336_cov_100.611, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 58801 29 100.0 36 ............................. TTTAATATATTATCAACTTCACTCAAAGTCTCGTCA 58866 29 100.0 37 ............................. GTTCTACAGGTTGCTACAATAGCAGTTCAATCATTGA 58932 29 100.0 37 ............................. TGAATTGTGTTTAATAAATTATATGCCTATTATATAC 58998 29 100.0 37 ............................. ATCCTTGATAGGATATCTTTCCAACCTTCTTGGAACT 59064 29 100.0 37 ............................. ATTAATGTTCTTGTAATCATCCTGGAGTGGATGGCTC 59130 29 100.0 36 ............................. TTACCTTTAGAAGAACCAAAAGAAACTGGAGAACTA 59195 29 100.0 38 ............................. ACATCAGAAGGATTACCAACAACAGCAACTTTTTTAGG 59262 29 100.0 35 ............................. TTAAAAGCAGAATAAGAAGGAACTAATCCAACCAA 59326 29 100.0 37 ............................. CAACAGTAATTTATCAATTAGCAACACCAGTAACAGA 59392 29 100.0 37 ............................. TTATCTTTTCCAGTTTAAATCTAATTTCTGAATTACT 59458 29 100.0 35 ............................. TCAGTATGTTTGAATAATCTTGCACCTTCAACTTG 59522 29 100.0 38 ............................. GCTACATATTTAGATAAAAGTTGGCTACCTTTGAAACC 59589 29 100.0 36 ............................. GGATTAATTGTAGCTACTATATTAGAACTTGTATTA 59654 29 100.0 36 ............................. TTTAACATAATATCAATCCTTTCTTTTATATAATTA 59719 29 100.0 36 ............................. TCTCTAATTTTTCTTTCCTTATAGTAGAATCTTCTA 59784 29 100.0 37 ............................. ACATATTTTGCTAAATTAGGTCCTGCACCATGTAGCG 59850 29 100.0 36 ............................. GTTTTAAATAATTCAACACATTTTTCTGTATAAATG 59915 29 100.0 36 ............................. TTTTCTCTTGAAATTACATTTGTTATGGGCAATTCA 59980 29 100.0 36 ............................. TTTATAAAAACTTAACGCTGAATCATCTTCACATTC 60045 29 100.0 36 ............................. AGCCTACAAGGAAACTTTAGGAAGGTGTAGAGACTA 60110 29 100.0 35 ............................. TACTATAGCAGATGTAGGAAGGAAAACTTATGTCA 60174 29 100.0 36 ............................. TTTAACAAATTGAACAATCTTTTTCATGCTATATTC 60239 29 100.0 37 ............................. TCTATAATTGCTTGTTGTGTTCTTTTTATATCTTCAA 60305 29 100.0 37 ............................. TAAAGTTGGTAAGTATGTTAGATTGCAAGCAAAGAGT 60371 29 100.0 36 ............................. TTTTATTTAGGATTGGAGGAATTAGTTTGCAAGCTA 60436 29 100.0 37 ............................. ACATTAGCTACATGCAATGCTACGCTTGGTGGAGCAA 60502 29 100.0 36 ............................. ATTAAGGATAAAAAAGTCACCAACTAAAAGAGAATC 60567 29 100.0 37 ............................. GCTTATATGATAACAATGTAAATAAGATTGATTCTCT 60633 29 100.0 36 ............................. TATCGTAAGGTGTAAATACCCCTTTTTGCGTAAAAA 60698 29 100.0 37 ............................. CCATATTTATATAAACTAGAATGTGAAGATGATTCAG 60764 29 100.0 36 ............................. TTGAATTGCGTATTTTTTTCTTTTTAGGTTTATCAT 60829 29 100.0 36 ............................. AGTTGTATATTTTCATATCTATCTGTAAGAACATTA 60894 29 100.0 37 ............................. CATCACAACACTACCCAAAACAAGTATAAAATTAGTA 60960 29 100.0 36 ............................. TCTGAAATGGTTAGATTCTTGATAAGAGATAGATAT 61025 29 100.0 37 ............................. AAAATGTTCATTCCAAGCTCAAAAGTTTCTAATTTTT 61091 29 100.0 36 ............................. CTTTTCTAATCTTTCTAAAGTTTTTTCATTAAATTT 61156 29 100.0 37 ............................. TTAACGGCTTGGCCAATGATCCTATAACAATTAAAAA 61222 29 100.0 36 ............................. TTACAGAAAAAGAAAGTGATTTATTATATAGAATTC 61287 29 100.0 35 ............................. CAAACACAAGCCGTTACAGACATAAAAGCAAACGC 61351 29 100.0 36 ............................. TTTTCAATCAATTCTATTATTTTAGTTCTCAACATA 61416 29 100.0 37 ............................. CATAACAATGAAATAATAGATATGGAGAAGTTTGTTA 61482 29 100.0 37 ............................. CATGAATTAGCTAAAATTACAGTTAGAGATATAGCTA 61548 29 100.0 36 ............................. TAAGTTTTAGATATTGTAAAATTCATCCTGATGTAA 61613 29 100.0 35 ............................. TTAGTTTCTTAATAGAGGGTAGATTATTCTACCTT 61677 29 100.0 37 ............................. CTATACATAAATACATGTTGAGGTGTATTTGGAGCAG 61743 29 100.0 37 ............................. AATATCTAAACAATTACTCAATCTTTCCGAACGTTTT 61809 29 100.0 37 ............................. CCAAATGCTCTAGAAATACCGCTTAATCCCTTAGATG 61875 29 100.0 36 ............................. ACACCAATACCTTGTGCCATAAATTTACCTACTTGG 61940 29 100.0 38 ............................. GAACTAGAAGGCATTTTATTTTGGGCCATTACAGGATA 62007 29 100.0 36 ............................. CATATAAGTCTTTATAAGAATCAAATATTCTATATT 62072 29 100.0 37 ............................. ATTGTTATAAATGGTAAAGTATTAAAATCTATAAATC 62138 29 100.0 37 ............................. TGTTAATAATAAAGATATAGAATATTATAAAGAAAAG 62204 29 100.0 35 ............................. TTGGTTTTGTGCTGTTATACTATCCCCAAAGCATG 62268 29 100.0 36 ............................. TTATCAAGGTATCATTAACGCTAAAAACTGGTTCAT 62333 29 100.0 36 ............................. ACATTTGATGATTTATATTTTGGTAAAAAATTTAAA 62398 29 100.0 36 ............................. TATATAATATCATCATCACCCGTGATTTTTATATAT 62463 29 100.0 37 ............................. GAAAAGTTAGAGGAAAAAATTTATAGAAGAGAGAGTT 62529 29 100.0 36 ............................. TTAACAACATTAGGAACAGTAGTAGCAACAGAACTA 62594 29 100.0 37 ............................. ATAGAAGGATCTTATGACGAATGGTTATATGGATGGA 62660 29 100.0 37 ............................. CTAAACTCTTTTAATTTGAGGATAGGAGCTTTCAGAT 62726 29 100.0 36 ............................. AAATAAAAGAAATACAATAAAGGAATATGAGAAAGA 62791 29 100.0 37 ............................. TTCTTTAAAAATGATATAAAAAAAGAACTTATTAAGC 62857 29 100.0 36 ............................. AAACATTCTTCTCCCCAAGTACATCCTTCAGGATCT 62922 29 100.0 37 ............................. TTTATTTTATCTAGTCTATATTTAAAAGCATTTTCAA 62988 29 100.0 37 ............................. ATTTAAAATTTGTTGCTGAAGTTTTACTTTATTGTTC 63054 29 100.0 37 ............................. AAATTATTAGCTGCCCATTTTAATTGAGTATAAGTAG 63120 29 100.0 36 ............................. TTATTAGGACCTGAAGCAATTAAAAAATTTAAAGTT 63185 29 100.0 36 ............................. TCTCGATAATAAACAAAATCAAAATGAACCTTCTCA 63250 29 96.6 38 ....................G........ TGGCACAGTGCCTTAATTTTCCCTGTTGTTTTTGAATA 63317 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 63383 29 86.2 0 .................GAA....C.... | C [63410] ========== ====== ====== ====== ============================= ====================================== ================== 71 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTCAGCATTTTGAAATTTGGG # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAATATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGTTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAGAAAAATAAACAAGATAAGTAATTTAAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTGATATATACTTGTTAAATTTAGAACTTTGAATCTAATAATCTATACATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //