Array 1 3823039-3821135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXXR010000001.1 Salmonella enterica strain S15BD05371 1_circular, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3823038 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3822977 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3822916 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3822855 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3822794 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3822733 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3822672 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3822610 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3822549 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3822488 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3822427 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3822366 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3822305 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3822244 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3822183 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3822122 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3822061 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3822000 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3821939 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3821878 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3821816 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3821713 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3821652 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3821591 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3821530 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3821469 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3821408 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3821347 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3821286 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3821225 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3821164 29 96.6 0 A............................ | A [3821137] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3840663-3839170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXXR010000001.1 Salmonella enterica strain S15BD05371 1_circular, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3840662 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3840601 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3840540 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3840479 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3840418 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3840357 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3840296 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3840235 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3840174 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3840113 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3840052 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3839991 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3839930 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3839869 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3839808 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3839747 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3839685 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3839624 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3839563 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3839502 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3839441 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3839380 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3839319 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3839258 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3839197 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //