Array 1 123415-123814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZW01000006.1 Porphyromonas gingivicanis strain COT-022 OH1391 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 123415 36 91.9 35 ...-....G.C.......................... ACAATGAAAGAGGAACAGAACGTACAGAGTTTGGC 123486 37 100.0 34 ..................................... CTTGGAAAGCCCAAGTAATGATAAGTAGAGCAAA 123557 37 100.0 36 ..................................... TGATTCCCATCAAAACGAAATCACTTCGTCATATCC 123630 37 100.0 38 ..................................... GCCTTAAAGAAGGGAACAAAACGTATGAATACATTTCA 123705 37 100.0 36 ..................................... AAGAGATGAGTGAAACTGTTGATGAAATTGCAAAAA 123778 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 98.6 36 GTCTTAATAGTCTTACTGACTGTCTTTGTATAGATGC # Left flank : GTGCGCAGAGCGTTAGGTTTAGTGGCAGATTCCCAGCCGTTGTCCTCGCCTCCCCAGTCACCGCCTTCACTTTCGTAAAAGCAGTTAGGGGCAATTTCGACAACTTCATCGGGCATTTTAATGTCTCCCGTAGCCATCGGCCAGCTTATAAGCACGCCGTTTTGAATGTTCTGAGCTTTGATCCCAAAGGTTATGGTAATCAAAGAGAACAGAAAGAAAAGAGTGATTTTTTTCATTTGAAGAAAAGATTAAACGATTCAATTTCTGTCTGCGTTTGCAGTTAAATTCTTATTTAATTGGGTGATAAATTGCTTTTGCAAAAAGAACTTATAGTCAGATGACCTCAAGATGGTTTTGGTATAAGAAAGAAGATCAAAGAACACTCTATATGAAATAAGGAAAGAAAGTAGACGTTCTGCTTGCTCCTCTCTCATAGATAGTGCTTATTGCAACGCTCACAAAGTTAAGAATTTTTCTGTGTAGATAGATGCTCGTCTTTC # Right flank : AATCTGATTACCAGCAACTTACGAATTTTCATTTTCGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGTCTTACTGACTGTCTTTGTATAGATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 71995-73802 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZW01000002.1 Porphyromonas gingivicanis strain COT-022 OH1391 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 71995 30 100.0 35 .............................. CGTTGAAGATTTTGACTTTTGGCAGAGCGGACAGA 72060 30 100.0 35 .............................. AAGCATGGATTATATTAAACAGACATATGCAGGTG 72125 30 100.0 35 .............................. CTTAAAAGCGCGAGACGGGCGAATATTGCCCGGGT 72190 30 100.0 37 .............................. GGTACACGCAAGACTTGTAGCGAGTATCGCAAACAGT 72257 30 100.0 37 .............................. ATGTAGCGAAGTCGGGTAGTGAGTTCGATTTAACGGC 72324 30 100.0 37 .............................. GAGTCTACAGCAAGAATGGACACCAGCACGTTCTCTG 72391 30 100.0 36 .............................. GTTCAGGGCAATTTGAATGATGCTTTGAGGCTGAAA 72457 30 100.0 37 .............................. GATGCAAAGATAGTGCAAGGTGGCTTGTGAGCCGTCA 72524 30 100.0 36 .............................. TTCGCTAAAGAAAGACTTACATTCTCTCAATGTTAA 72590 30 100.0 35 .............................. AGAAATCCCTCATACCGCTCAAGGTATCTTGATGC 72655 30 100.0 36 .............................. AACCTCATTTACTCTACTAATCCTCACTCCCCGTCC 72721 30 100.0 34 .............................. TGACAAGTCGCCCTAGAGGACCTAAGGGGTGTAT 72785 30 100.0 36 .............................. ACCCTTAAACGTATAGCTGCCTTGCCGTTCAAGGCG 72851 30 100.0 37 .............................. GCATTTTGTAGATTTGAGAGTCGGAGCAATCAAACCT 72918 30 100.0 34 .............................. TATTTGATAACACAAATCCTCAAAATCGAAATTC 72982 30 100.0 34 .............................. TTGCCTCTTTGTTCCCTTTAACCTGCGACCGCCA 73046 30 100.0 35 .............................. TCTATACTTGATATATTATATGGCAGGTGACACTG 73111 30 100.0 35 .............................. GTAACTCTAATTGCTTTTCTTGTAACTTTAACTGT 73176 30 100.0 37 .............................. AGAGGAGAAAACAAAGGAGGATTGTTTGCGCATAAAT 73243 30 100.0 37 .............................. TTGATAACGAGAGTTCCCTTGAACTCCCTTTCGTCTG 73310 30 100.0 38 .............................. TATTGGGTACCACTTCGTAATAGGCCTTAACGGAGAGG 73378 30 100.0 36 .............................. GTCTTCTGCAGTAGCTTCTGCAGTAGGTGTTTTAGA 73444 30 100.0 35 .............................. AAGCAGGGTCATCGACGGGGAAGCAAACCCCGTCC 73509 30 100.0 35 .............................. TATTCATGAACTCCAAAATATCGCACAGCGTGCGA 73574 30 100.0 36 .............................. CCTTTATTGGCTCGCCTAAAGACAAAAAATCCTTGT 73640 30 100.0 37 .............................. TAGCGATGCACACGTAGCGTTGAATAGTCCTCAGCAA 73707 30 100.0 37 .............................. TTATCTATCGAATTGTTATAGAACTGCCCGAGAGTGC 73774 29 93.3 0 .........................-...T | ========== ====== ====== ====== ============================== ====================================== ================== 28 30 99.8 36 CTACTAATCGCACCATTATGGAATTGAAAC # Left flank : CCGATTATAACTGGCTCTATTTTTGTACTTTTGTGTAGAGAAAGAAGGACTTTCAAGAGAAGTTCAAGAGCGAATCTAAACAATAAGAATCTGCAGACAGCAATCTAACAGAAAAACAAAAGCTGAATCTCTCAATCTTGAATGCCAATGATGATATAACAATAGTGGTTCTATTTTTGGGAAAGGAATTAGACAAGGAATACATCTGCTAACCTCTCTCTTATAGACTTTCACAATAGGGATTCTTGAAAAAGAGAACAATGCGACAAATCCTCTTTTACCTCATTCTTAGGTTGTCGTTCTTTACGACAAAAGACTCATCTGGAGGCAATCGTCCACTCGGTATTGTTCTAATCCTTGAAAAATACTTGATTTCTTAAGGTTGTCGTACCTCCACTATTTTTATACAATTACCCATCGACAACTTTTCTTCTTCAAAAAACAACTTTTTTCCTTGGTAAAATGCGTATTTACGTCATTTTTTTCTTGTAATTTTACGG # Right flank : TAAAATAGGATTAGAGTCTTATTTTGTAAAGGAGATTCGCTCAGGAAAAAACTTTCTTCTTACTTTTGCATCGGGAAGAAAAAATCGGGATATGGCACAGTTGGTAGCGCGCCACGTTCGGGACGTGGAGGTCGGAAGTTCGAGTCTTCTTATCCCGACTTTTCTTTCAACTCTCTCCCTTCTATAGGGCATGCTCTACCTATCAAAACAGAATTTAGTTTTCTACATTTAGTATTACTACAGCTATTGAAAAGGATTAAGGAAATAAATCCTCTCTTTTCATTTCAGGAAATGAGAATAGACAAACACCTATAAAAGAGGGATATAACACATTAAACTCTTGAAAAGAAAAATATTTTCTCTTTCTTTTTGATTATAGCTATTGTAAAATCCATTTTTTATTGTAACTTTGCAATCGGTTTTAACGAGCTCTGCTTCTTTTTGAGGGAAGAACAGATATGTTTATGGGTTTAAAACTAATGGTGCCATAGCTCAGTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTAATCGCACCATTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 118606-118960 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZW01000002.1 Porphyromonas gingivicanis strain COT-022 OH1391 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 118606 30 100.0 36 .............................. CTGGAGGTTTTGACGCTGGAGGAGGCTATAAGACTC 118672 30 100.0 34 .............................. ACAAGCAAAAAGGTGAACAACAATAATTGTATTG 118736 30 100.0 35 .............................. AAATTTTTTTGGCTGTTTAGATAGAGGATGCCAAT 118801 30 100.0 34 .............................. GAATTAATTGGAGTATTATCTAGACTCATAGTAA 118865 30 100.0 36 .............................. AGAGTTTTTGAGACAAAACGACTTGGAGGGCGCAGA 118931 30 80.0 0 ......................T..TTTCT | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 96.7 35 CTACTAATCGCACCATTATGGAATTGAAAC # Left flank : GCATTAACCCTTTCGAGAGTTCTGACAGAGGGTTTTGATTGTTTGCACAGAGGGTTTCAAAAGCTAATCGTATACTTTAAGAAGCAACACATAGAGACTTTCGCACAGGCTTTATTTAATTAAGAGCAAGGTATCGGTTCTGGGGAGAAATATTATATAAGGCTTCAAAGACTATAGAGAAACTTTTTGAATAACTTGCGTTGAGCAAAAACAAAACAAATTACGAAGAGAAGTATTCTTGAAAAAGAGACTTAACAGACTCTATAACGAAGTTTTGTAGCAACTCTTCAAGTTGTCGTCGAATTATTTAAGAGTAGTAGGAAACCTCGTTCTTTATTCTCTTATAGCTGACAACCCAGTAAAAATGGGGAAATTAAATAGTTGTCGTATCTCCACTCTTTTTATAGGATTAGCGATTGACAACTTTTCTGACCTCTTCCACCTCGCTTTTTCCTACACAAGACCTCTATTTACGTCATTTTTTTCTTGTAATTTTACGC # Right flank : TGATACAACAAAAAACATCGGTCGCGTCTTACCACAGACACAACCGATGTCAATAAATTGGGGTTCTTATGAAGATAGGGGTTCTCCTATGGAGAGTTACCTACCCTAAATAAAATCTCTATTTCAAGAGGTAAGTACTTAGTCGTCTATCTCCTCTTCCAAAAGCTCTCCTAAGAGAGAAAACTTCAAATCGTACTTACCCGCTTCTACCTCATACATACTCTTTTCGAGCTTTGCATCAGATACAAAACCTATGAGTTTCTTATTTACAAGATAAGTTATAGCAGGATCAGGTAAAAATGCTCTCAAAGCACTTTCGGGGATAAACAAACGCCAATCTTCGTCTCCTTCAATCTCTACTAAAGTGGCAGGAGCCTTATACTCTAGTTTGTAACCCTCGTTATATCCCTTTTGGAGATAAAACTTATAATGTAAAGCACCCTCTTCTCTCTCTGTACTTGTTTGAACAATTCTATACTCTGGGAAGTGAGCATTCATAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTAATCGCACCATTATGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 3849-4479 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZW01000017.1 Porphyromonas gingivicanis strain COT-022 OH1391 contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3849 37 100.0 39 ..................................... GAAGATATACTCACTCTCCGCACAAACTTCTTGGTGTCN 3925 37 100.0 35 ..................................... GAAGATATACTCACTCTCCGCACAAACTTCTTGGT 3997 37 100.0 37 ..................................... GTGATAAAAAACGAATGACTAAACAATTAAACGAAAA 4071 37 100.0 41 ..................................... NTGCGTGATAAAAAACGAATGACTAAACAATTAAACGAAAA 4149 37 100.0 36 ..................................... TCCAACTCTGAGTTGGAATTTAAGTCTACCCTAACA 4222 37 100.0 36 ..................................... ACTAGAAAGGAATCTGAAACAAGCAGGTATCTATTC 4295 37 100.0 37 ..................................... CTGGAGAAATATTAGAAAAAATTCAGATCCCATTTGA 4369 37 100.0 37 ..................................... AGAATGGGAAGCCATTCTTTGTGTTTAACTCTAAATT 4443 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 100.0 37 GTCTTAATAGTCTTACTGACTGTCTTTGTATAGATGC # Left flank : TTGGAGAAAATCTTTCACAAGCGACTCTTCTCTGCTTACTACTGTAATATACAGATCGACAGGCTCTTGTTGAGTTAGGTTGTGTCTATAGGGTTTATCTACTCGGATAACCAGTCGAGAAGAAGAGGACTCAAGTTCTCCTTTGTGTTCTGTAGCTTGTGGTTTGAAGAGGGTGGTATAGAGATGAGAGAAATCTTGACTCTTTTTTAACGCATTCCCCAAGGCAAAGCGAGGTAAGAAATACCATTTACTCTGAAAAGCGACATCCTTTTGGGCTACAAACCTAACTCTCAGATGATAGGCAACAAACTCTCGAAGAAATATGGGAAGTGTGTCAGAATTTAATTTGTCCATAGAAATCCTTTTGCAAAACCGTTCTCTGTTTTTTTATTGTATTTGGTACGGCAAAATTAGTTTAAGTTTTTATCTCTTTTAGCGCTACTCCTGATTTCTTTTTATAAACATTTCCTGCTCTCATAACTCATATTCATACGAACTCC # Right flank : AATCTGATTACCAGCAACTTACGAATTTTCATTTTCGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGTCTTACTGACTGTCTTTGTATAGATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //