Array 1 130602-129797 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHDY01000027.1 Acinetobacter baumannii strain MRSN7576 MRSN7576_contig00027, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 130601 28 82.1 32 A.CTA.......T............... ATAATCTTATAGGTGTCACGGCCATTAGGTTT 130541 28 85.7 32 ....C.....AT.C.............. TAGCCCTTCGGCTTGATGATTATTGAGTCTTT 130481 28 92.9 32 ...A...............G........ TATCGTGTATTTGATTCTAAAAAGAAAGTGAA 130421 28 89.3 32 ...A........CC.............. AAACTCACGAATAAACTGTTCTGGTTTCATTG 130361 28 96.4 32 ...A........................ CCCAAACTTCCCGACCATTCTCGATATAAGCA 130301 28 100.0 32 ............................ TGCGCCAGTCGGTGCCGTACCTAAATTTACTG 130241 28 100.0 30 ............................ TTTAAGCAAAAAAAGCCCCTTAAAAGGAGC 130183 28 100.0 32 ............................ CAGATCGTTGACGAGCTAGGCGCGACACCAGA 130123 28 100.0 32 ............................ TTCAATTGTGAAGTCTTTGCCCAGTAATGAAG 130063 28 96.4 32 ...A........................ ATTCGATAGACTGATTCTATAAGCTTATTTGC 130003 28 100.0 32 ............................ TTTCACCGAATGGCGATGGATTCAAGCCACAG 129943 28 92.9 32 ........C..T................ ACATTCAAAGAGGCTCATCGAATCCAATCGAA 129883 28 78.6 32 T..TA.......TC..T........... TTATCTTGAACCAGTGAAGCCGCGTTTTTACT 129823 27 82.1 0 ...TC.......T.........C.-... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 92.6 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTGTTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGATTTTACTCCTCACAAATCATAATGATTGAAAGTAGACCTACGCTTTGCTGTATAGCAGTATGAGACAAAAGTTTAAAATGTTGTGCTATCATTTGGATAGTCCTTCTTTAAGTTATAGAGCTTTGGAAACGGACAAAAGCAGATATGAAGTTTTCGACGGCTAAGTATCTGCTTTTTTATGTTCGTTTAGTATTCAAAATATATAGTTTTAATATGTAAGTCAAATAAAATATATATATAACTATTAAGGGATATACTTTACTGATTTCAATTAAGAGTTATACTAAATGCTTAATCCATCAACTGAGATGGTTGAGAAATTAATAGTTATTATTAATTTTTATGT # Right flank : TTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTGCGAAGAATGAAGCTTGCATGGGTTGTAGGAGCAAGACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCGGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCATCCCAACATTTTCAG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 136157-136544 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHDY01000027.1 Acinetobacter baumannii strain MRSN7576 MRSN7576_contig00027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 136157 28 100.0 32 ............................ TTCTTCACGACTCATGCGTGTTGCCACATCGA 136217 28 100.0 32 ............................ AGCACAAAATTTATGGTATACAAAAGCAGCCA 136277 28 100.0 32 ............................ TCTGATGCGATTAATTCTTGAATGTTCTCGGC 136337 28 100.0 32 ............................ ATGTACATATGCTGTTTTAGCAATCATTGCTT 136397 28 100.0 32 ............................ TTATAGAAACTTTCCCATGCATCCTCATAATC 136457 28 100.0 32 ............................ TTAATGATACTACTCTCACCAATGCTGATTAC 136517 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AAAGGCAATAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2150-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHDY01000039.1 Acinetobacter baumannii strain MRSN7576 MRSN7576_contig00039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 2149 29 89.7 31 ....G.......CC............... ATCGGGCGCTTGTTCTTTTGAGGTGTCTCAT 2089 29 86.2 31 ....G.......CC..............A TGAGAGAGCGAATTTTTGCATTAGTCGATGT 2029 29 86.2 31 ....G.......CC..............A ATATGCGACAGATCTAAAAACGCTTGAGGAA 1969 29 82.8 31 ...AC.......CC..............A GCAAAGTTTCAGGACAAAGTTATAGCGCAAT 1909 29 86.2 31 ...AC.......CC............... AGCTGTAACTAGGGGCACACATTCATAGGAG 1849 29 82.8 31 ...AC.......CC..............A CGATCATCATTCAGAGAATTTCTTAAACCTG 1789 29 82.8 31 ...AC.......CC..............A AAGCAGAAACAGCAGAACCCAGAATCTTTGT 1729 29 86.2 31 ...AC.......CC............... TTAGTTAGCCCAACAAGAAATTGATCAAGAA 1669 29 100.0 31 ............................. TTCTTTAATAGGTCTCTTTCATTGCCAATGA 1609 29 100.0 31 ............................. TGTATTGTTGCTGACTTAAACCAATTCTTAC 1549 29 96.6 32 ............................C TTGAGAAATTCCATTCTCTTTGGGTACAGGTA 1488 29 96.6 31 ............................A CAATATAGATATGCTCAGCGTTTTGAACCGA 1428 29 100.0 31 ............................. TTGTAACCACCAGTTAAAGTATTGACTAAAT 1368 29 100.0 32 ............................. TTGACAAAAAAAGTGTTTGGATGCTTTCGCCA 1307 29 96.6 31 ............................A TTGAGAATCCAGTAGGCCGAATAGAAAAGCT 1247 29 100.0 31 ............................. GTTTTGCTAATTTATCAATATCGATTTTCAC 1187 29 89.7 31 ...AC.......................A CAGGGGTCAAGTTCAGAAGATTTACGTTACA 1127 29 82.8 31 ...GC.......CC..............G TCATAGTCCTTCTGAACACCAAATGTATAAG 1067 29 82.8 31 ...TC.......CC..............G GTATTAGTGCGAATTGGCTTTTAGCCCACGC 1007 29 93.1 31 ....C.......G................ TAAATGCTCAACTATTTCTGTAGCTAATGGA 947 29 86.2 31 ...GC....T...C............... TCAAATGATTTAATGAGCTTGTAGCCATTTT 887 29 86.2 31 ...GC.......T...............A CGTCTTCTAATGATGGACTTTAATCCAATAT 827 29 79.3 31 A..GA.......TC..............A TCTCACTGAAGATATGACCATCACTTTCTTC 767 29 79.3 31 ..CGC.......CC..............A AGCCATTTACTTTGATAAAGCGACACATAGC 707 29 96.6 31 ............................A GCTTCAACACGTGTGCTATTAGGCGGCAAAG 647 29 96.6 31 ............................A TGAGCAAATTATCAATTGATCTATCTGCAAG 587 29 93.1 31 ............CC............... AGACGGTGTTACCTGTAGGCGGTGTCTACTG 527 29 86.2 31 ...TC.......C...............A TCGTTTGAATAATATGGACAATCCAGCCAAT 467 29 86.2 31 ....G.......TC..............G CAGCATCAAACGAGATATTGGCTAACATATT 407 29 79.3 31 ...G......A.CC...........C..C AAATAGTTTTAGCTATCTGAGCATTTAATTT 347 29 93.1 31 ....G.......C................ TCATCACGTAGCCTTTTACACGCATCTTGCG 287 29 96.6 50 ....................C........ GTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 208 29 89.7 31 ....G.......CC............... ATATATACTATTTTCTCCGTCATTTTCTTTT 148 29 82.8 31 ...TC.......CC..........A.... GATAGTTCGGAGCATGTAAATCTCCAAAATG 88 29 82.8 30 A..TA........C..............C CAGTTTGCTGAAAATCACCAATACGGTCTT G [63] 28 28 79.3 0 ...TC......TCC..............- | ========== ====== ====== ====== ============================= ================================================== ================== 36 29 89.3 32 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : GAAACTTGAA # Right flank : A # Questionable array : NO Score: 4.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [34-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //