Array 1 6230-5666 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWOB01000075.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016020 scaffold37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================== ================== 6229 24 91.7 36 .......AT............... CCGGTTACCAGATACCATCAGCTCCTTCAGTTCTGA 6169 24 87.5 36 .....A.A.......A........ CCGGTTACCAGATACAATCAGCTCCTTCAGTCCTGA 6109 24 95.8 38 .....A.................. CCGATTATTATAGGCCCACAGCTTACATAATTCTGACG 6047 24 100.0 23 ........................ GCCCACAGCTTACATAATTCTGA Deletion [6001] 6049 24 100.0 36 ........................ TTGGTTATCAGATACCGACAGCTCTTGTAGCCCTGA 5989 24 91.7 36 .....A.A................ CTGGTTATTATAGGCCCACAGCTTACATAATTCTGA 5929 24 95.8 36 ....................C... TTGGTTATCAGATACCGACAGCTCCTGTAGCCCTGA 5869 24 91.7 34 .....A.A................ GATTACCAAAGATCCACAGCTTACATAGTCCTGA 5809 24 91.7 38 ................TG...... CGGGTTACTAAAGATCGACAGTTCCAGTAGTCCTGGCG 5747 24 100.0 34 ........................ GGTTACCAGAGACCTCCAGCGTCCGCAGTTCTGG 5689 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================== ================== 11 24 95.1 35 CGGCAGCGCCGGCAGGCTGGTCAG # Left flank : AAAAAAAATGTGACCCGGTCCTCGCAGCTTGAGGTTGCCTCTGTTGCCATGGCAAAGGTGTTTGCTCTCAACGCCTCATCTTCAGCCAGTTGTGCCAGCCAGGACGATATCTGTGCCTTAAACCCCGCGTCCTTTATGAAGTTTTCCGTCTCACTCAGTCTGTCCAGGAAGAGGCTGAAGGCAGCAGCGTTATCTTCCTGTCCGAACATATGCCATCTGTCTGCAGGAGCCGGTTCCCCCTCCCGGGCAGGTACCAGCCAGTCAGCGGCCGCCAGGTGCAGTGCCCGGGCTTCCCGGGGGGCGGAGGCTCCCGCCATATCGAATCGTATTCTGGGGCCTGAATAGCCAGGCGCGCTGGTGATCTCCCGCAGCGCCTGCAGAGTGCGTTCAGACAGTGGATTCCCTTCCAGATTTACGGTTGTCTCTGAAGACAGATGAATGAGACTTTCCGGCAGGCGGGTCAGCTGGTTACGATAGACCGACAGCGACAGTAGTCCTGA # Right flank : ATTATTATCAGGAATAACCAGTGTGGTAATATGCGCGGGTAAACAGTCTGGCAAGGTGGTAAGACCTGATTCTCCCACGTTAAGCACTGCATTGCCATTATTCAGGCAGGCACGCATTTTCTGTACCACTGCTGCACGGCCGCGTGACTCTTCTGCGGGTGCAGCCCTTCTCCACGCTGACCAGACAGCATCATACTCTGCTGGCGTCTGTGGAGCCGTTGTGGCAGGGAGGAAGGATGTCCTGAATGTCCCGGATGCCCCTTCCGCGTGTCCTGTGCCCTCCTCACCCTGTGCTGTGTCCAGGGTGAGGCGATGTGTTTCACTGTACCCCTGGCAATTTACGGTATAGTTCCCGGCATCATCAAGGGTGACTGACAATATCTCCTGACTGTCTTCATCCAGAATACAGAAGTAATTTTCCCCGTGCTGGCCGGAATGAATGCTTTCCTCCCATCCGGCATACGCGAGCGTCCTGAGCAGTTCAAATCTGTTGATCACAT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCAGCGCCGGCAGGCTGGTCAG # Alternate repeat : CGGCAACACCGGCAGGCTGGTCAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 163273-160925 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWOB01000039.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016020 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163272 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163211 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163150 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163089 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163028 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162967 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162906 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162845 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162784 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162723 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162662 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162601 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162540 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162479 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162418 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162357 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162296 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162235 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162174 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162113 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162052 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161991 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161930 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161869 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161808 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161747 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161686 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161625 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161564 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161503 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161442 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161381 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161320 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161259 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161198 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161137 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161076 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161015 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160954 29 93.1 0 A...........T................ | A [160927] ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181823-179780 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWOB01000039.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2016020 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181822 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181761 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181700 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181639 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181578 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181517 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181456 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181395 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181334 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181273 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181212 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181151 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181090 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181029 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180968 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180907 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180846 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180785 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180724 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180663 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180602 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180540 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180479 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180418 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180357 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180296 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180234 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180173 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180112 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180051 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179990 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179929 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179868 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179807 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //