Array 1 65865-63437 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZN01000014.1 Aliivibrio finisterrensis strain A21 NODE_14_length_105508_cov_58.2234, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 65864 28 100.0 32 ............................ ATGGCTAGGACCAAGCACAGCAAAGGCTTATG 65804 28 100.0 32 ............................ ACTAGCGCAAATTTGGACAATTTCCGCTAACC 65744 28 100.0 32 ............................ TTGTGTTTAGTTGTTGCAATAAGCTCCCTAGG 65684 28 100.0 32 ............................ ATTCGAGCAGCTTGAATGTACGCCTTATGTCT 65624 28 100.0 32 ............................ TCCTCTCGCAAAATTAGCAATTGCTAATTTAG 65564 28 100.0 32 ............................ AAGAAAACAGAAAACAGGCCAAAAACGGTTGA 65504 28 100.0 32 ............................ GTTAACTAACCATTGACCCTCAAATCCTTTGT 65444 28 100.0 32 ............................ AAAAGCCACGTAGTGTATGACCAAGAAATGGC 65384 28 100.0 32 ............................ GTTCAGCAATAAATCAATCGCACGACGATATT 65324 28 100.0 32 ............................ AGAACGGTATAAGCAATATCAAACCCATCAAC 65264 28 100.0 32 ............................ TGACGTTGGTAAATCTTGCTTGTTACTGGGTA 65204 28 100.0 32 ............................ ATGCTCATGAAAGAGATTGCAGCTAGGTTATA 65144 28 100.0 32 ............................ ACGTTGGAGAAGATGACTCTTATGTTGTTGTT 65084 28 100.0 32 ............................ TACGATTTTCATTTTAACGCCACATTTTCCAA 65024 28 100.0 32 ............................ ATGGAAAGTTTATGGGAACTTGGTTTGATTTC 64964 28 100.0 32 ............................ ACTGAGAAATTCAAAACTTGCTGTGGAAAATG 64904 28 100.0 32 ............................ CTTTAATTTCTTTAATTGGTTACATAACCCAT 64844 28 100.0 32 ............................ TGAAGCTTAAATGGTTATAAGCAGTCGCCTCA 64784 28 100.0 32 ............................ TAGCACTAAATAACCAAACAATGAGCAGTCGA 64724 28 100.0 32 ............................ TATTAATTCGTGATGGCCGTTAACTTGAGTGT 64664 28 100.0 32 ............................ TTCTTAGGGAATCCATTCAATTGGATCATTAC 64604 28 100.0 32 ............................ TTGTTCGCCCCCTTACAAATGAATTTGAAAGC 64544 28 100.0 32 ............................ TCTCATAATGCGCACTTAGCTACGGCTTCTTT 64484 28 100.0 32 ............................ TTTGGAGAACGGCCGCGAGGATTTAATCTAAA 64424 28 100.0 32 ............................ ATCCAGTACCAGACACCAGAAGTGACGTAGTA 64364 28 100.0 32 ............................ GGCTAAAGACGATCCACCACTTGTTACTCGTT 64304 28 100.0 32 ............................ TAATTCTCAACATTTCTGTCCTTACCCATCCA 64244 28 100.0 32 ............................ TTGCTGATAGATCAGATGATTTATCAACCAGT 64184 28 100.0 32 ............................ TTGACTACTACGTAGAATTTAACAAAGTTAGA 64124 28 100.0 32 ............................ GACAAGTGTGTAAGCTCGGCTGAATCTTGTAT 64064 28 100.0 32 ............................ CGCTACACGGTCAAGCAAAGGGTAGTGATGGA 64004 28 100.0 32 ............................ ACACTCAATCTGGTCTATAACCATGTTATTTT 63944 28 100.0 32 ............................ AATCCAAAGCGCAATGAAATCGGTATTGTGTG 63884 28 100.0 32 ............................ ATCAACTTTGCATCGATAGCTAAAGTGAATAC 63824 28 100.0 32 ............................ TTCCACAATGAAGATGATCGAGAGTTAGATTC 63764 28 100.0 32 ............................ TTGAGTTAATCCGCTTGGCAATGCTGCTGGAT 63704 28 100.0 32 ............................ AAGAAAACGAGATCCGATAATTTCATCACTCA 63644 28 100.0 32 ............................ AATAGACAGGCGATTGACGAGAACCAACCGAA 63584 28 100.0 32 ............................ ACCAGAAAAACCAAATAACATTATCTATATCC 63524 28 100.0 32 ............................ TAACATCCCGTAAGCCAACATGGCTCTAGAGT 63464 28 75.0 0 ...........TG........AA.AG.G | ========== ====== ====== ====== ============================ ================================ ================== 41 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGAAGCAGTTATTTGAGATAAATTGGCTGAAAGGCTTACGTGATTATTGCTCTCAAACATCAATTTCATTGGTTCCAGAGGGTTGTCAATATCGCTGTGTAAAACGCAAACAAGCTAAAAGCGCTAATAATAAACGCAAGCGTTCTATTGCTAAAGGTTGGTTGAGTGAAGAAGAAGCGACATTGAAAATTGGTAATGAACAGCAAAAAATGTTGCGCTTACCCTTTGTTCAATTAAAGAGTACATCCACAGGACAGGTGATGAAGTTATTCATTGAACATGGTGGATTGCAAGATAAAGCGGTTGAAGGTCAGTTTAATCGCTATGGATTAAGCTCATCAGCAACGGTCCCTTGGTTTTAACCCAAAATAACCAAAAAAATGGCTCTTTAAAATGAAGTAATAAAATCAGTAAGTTACAATAGGTAGGGGAAATTAGGTAAAAATGGGTATTTTCACTTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTATT # Right flank : TTAAGAAAGAAGTTTGATAGCTATACCTCATATACTTTTAATATTTGCGGTATGACAGCGTTGCTAGAAAATTGATCTTGAATGGTTCTTTGGGCTGCGTGTTGAATTTCAACTTTATTAATCGATGACAATTCAAACCAGTGGAGTAGGGCTTGAGAAAGAGCTTCTGGCTCGGTTATCCATCCATTCATTTCTGGCTGTATGAGTTTACTGATATTACCCACAGGGGTTGATATTACTGGTATTCCTCTTCCCATCGCCTCTAATGCCGTCATGGGGAGCCCCTCGTAGCGAGAGCAGATAATCAGTAAGCCAATATCATTCCAAATGGTGTCCATTGAATCTTGATGTCCATGAAAAATTACGTTGTTTGGAAGGTGTTTAATCAGCTCTTTCTCCATCGGGCCTGAACCATAAATATGAAAAGAGTGATTAGGGTGTTTCTTTGCTAATTCGATGAATCTATCAGGGGCTTTTTCATGGCTTAAACGACCTACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 76737-75449 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEZN01000014.1 Aliivibrio finisterrensis strain A21 NODE_14_length_105508_cov_58.2234, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76736 28 100.0 32 ............................ ATCGGAATAACAGCAATTATATTAATTTTATT 76676 28 100.0 32 ............................ AAATAAATACAAAGATAATCGCATTGACAATA 76616 28 100.0 32 ............................ TCAGTATGGTGCAACCCGCCATATAGCGATAT 76556 28 100.0 32 ............................ AGCAAGACGAAGAAGAAAAAACAGAATAAGAA 76496 28 100.0 32 ............................ ACAGTCAAAGATAAACCCACGACCCAAGAATC 76436 28 100.0 32 ............................ AAGCCGCCACCTGCTACGACAAAAAATATCAT 76376 28 100.0 32 ............................ AACAACAGTTTACCACGTTGGAGAAGATGACT 76316 28 100.0 32 ............................ TGTTAACTGGATAGCTGAGGCTATTGCTGATT 76256 28 100.0 32 ............................ ATCAAAAGAAAATAAAAAAAGATGTAAATCTT 76196 28 100.0 32 ............................ ATCTAAGTTTGATGCTAATCCATTTTTTCAAG 76136 28 100.0 32 ............................ AGAAAGGTTGATGGAGATTGGTACTGCTGCGC 76076 28 100.0 32 ............................ CACCGCCATTGGAGGGGATAAAAACTCGTAAA 76016 28 100.0 32 ............................ TCGCGCAGCTCGTCAAAAATAACAAAGTGCCG 75956 28 100.0 32 ............................ AAGCAAGTCCAATCCGTCTAGTTGCTCCGTCC 75896 28 100.0 32 ............................ ATTGACGATTTTCACGAAATGTTTGGCCGTGA 75836 28 96.4 32 ............G............... TAGACCGTAAAGCAATACCTAAGTCTGACCCA 75776 28 100.0 32 ............................ ACAAAGCATCCACGGTTCAGTTCTTACAACCC 75716 28 100.0 32 ............................ ACCGCCTCTTCAAATTGACTGACACATTCGTA 75656 28 100.0 32 ............................ TTTACTATGTTTCGGCGGCGAACCGCTAATAC 75596 28 100.0 32 ............................ ATTAAAAATTATCTCTAATCAATTTCCAAATG 75536 28 100.0 32 ............................ ACCACTCTTTTTAAAGCTAATCCTGGCAAACC 75476 28 67.9 0 .......A...C.....T..AA..ATTG | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATAAAGTAAAGGGAGTTACATAACTCGCACTTAATTGCTTTTCAACCTGATCAACAAGGCGCTGTTGGTTGCACCATAAAATGCAGTTATATTTTTGGTGATTAATGCTTTTAATTAGATTGATTAAGCAGACTTCAGAACCACGGATCCAATCATCACCATAATGAACAAACAGTAAGGTTGTTTTTGTTGTATTTTCCATAGCACACCTTCCTCGCATTCTCTCTGATATAAGAGATAGAGCAAGGGCAGTGCCAGATTGTAATTGTTTTTATTTTATTGATTTTTAAAGGGAATTATTATGTGTATAGATCAGTTTTCTCAAATTGAGAATGTGGTTTTTTAAATTGGGAATCAGAGAGATAAAAAATACCAAAAAAAATAACGTTAACAATAGAATAATAAAATCAATGAGTTACAGGTTGGTTGGGAAAGTAGGTTAAAAAGTAATATTTAAGCTATCTGCTTGTTGTAACTTATTTTTATGCTGATATTCTACT # Right flank : ATTAAAATAACGAGATAACCATCATAAAATATCGATAAATATACTATTTTATTTATGAAATAGTATTATAGTAACTCTTTGTTTAATATTAACTTTATTGATAAGGCTGTTAATAGTGGAGCAACTCTCTCGTTTATCAATTATTCATAAATTACTTAGCCAATCCAAATACCCAGTACCGAAAAGTAAACTTCTAGAAGCGCTAGAGTGCTCAGAATCCACATTTAAACGGATACTTCGTAAAATCAATGACGAATTTGATGCTTCAATCTCATACGATAGAGAACTAAAAGGATATGCATACGATTCTGATAGTCATCAACTTCCATTATCGTATCTGAATTTTACTGATAAAGAATGGTTTGCCTTATTAACCGCAGAAAAACTATTTACCGATCTACATACAGGATCATTAAATAAAGAGCTAGAAGGGATCAAACACGTTCTACAAAAGACAAAAAATCGAGCAACAGATTTTGGCATCGCTAATAAAATAGAAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //