Array 1 981167-982780 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077668.1 Salmonella enterica strain SP chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 981167 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 981228 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 981289 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 981350 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 981411 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 981472 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 981533 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 981594 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 981655 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 981716 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 981777 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 981838 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 981899 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 981960 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 982021 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 982082 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 982143 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 982204 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 982265 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 982326 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 982387 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 982448 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 982509 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 982570 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 982631 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 982692 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 982753 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 998913-999552 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077668.1 Salmonella enterica strain SP chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 998913 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 998974 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 999035 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 999096 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 999157 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 999218 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 999279 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999340 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999401 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999462 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999523 29 96.6 0 A............................ | A [999549] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //