Array 1 584-2557 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWYB01000026.1 Neisseria meningitidis strain INS-Nm1028 NODE_26_length_23675_cov_72.6823, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================== ================== 584 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 650 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 716 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 782 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 848 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 914 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 980 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 1046 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 1112 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 1178 36 100.0 54 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 1268 36 100.0 30 .................................... GGTCAGATTACAACAACGTTGAGCGTGTGT 1334 36 100.0 30 .................................... TCTTTTGACAACAATTTCACTGGCGAAATG 1400 36 100.0 30 .................................... GCCTAGTTCCGGATTGTCAATCATCCCAGC 1466 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 1532 36 100.0 30 .................................... TCTGTGCGTTTGGATGCGGATGAGGCGGGA 1598 36 100.0 30 .................................... TCATTAAATGATGTATCACAAGCACTTTTT 1664 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 1730 36 100.0 30 .................................... AAACTTACCCCATTGATAAGGAAGCGGTTT 1796 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1862 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 1928 36 100.0 30 .................................... GTGCGTAGTCGTATTGACGCTCGTGCTGAC 1994 36 100.0 30 .................................... TGTTGTTGCAGGTCGATGGTTAGGGGTTCT 2060 36 100.0 30 .................................... TCCCTTAACCTGAAACGGAGTAATTAAAAT 2126 36 100.0 30 .................................... ACCATGGTAATGATACAATCTATCATATGG 2192 36 100.0 30 .................................... TTTATGCCTGAATTCAACGCATCTTCGTAA 2258 36 100.0 30 .................................... ACGACAAAGACGAACTGACGGACAAATACG 2324 36 100.0 30 .................................... CAATACCGCGTAGCTGCGCCCGCACCATGC 2390 36 100.0 30 .................................... AAACAAGACAGCCTCGAATACGATATAAGT 2456 36 100.0 30 .................................... CAATTACGCTGTCGATAACATCGACTTGGA 2522 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================================== ================== 30 36 99.9 31 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 34121-34443 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWYB01000020.1 Neisseria meningitidis strain INS-Nm1028 NODE_20_length_35794_cov_69.0975, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ====================================================== ================== 34121 26 100.0 51 .......................... CGGCTTGTTCGGTTTCGGTTTTTTTTTTTGAGGTTTCGGGCAACTTCTAAA 34198 26 100.0 54 .......................... CGGCTTGTTCGGTTTCGGTTTTGGTTTTTTTTGAGGTTTCGGGCAACTTCTAAA 34278 26 100.0 42 .......................... TAGACCTTAGAACAACAGCAATATTCAAAGATTATAAAAGAC 34346 26 100.0 46 .......................... TAGAACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 34418 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ====================================================== ================== 5 26 100.0 48 CCGTCATTCCCGCGCAGGCGGGAATC # Left flank : GTCATTCCCGCGTAGGCGGGAATCTAGGTTTGTCGGTGCGGAAACTTATCGGGTAAAACGGTTTCTTTAGATTTTGCGTTCTAGATTCCCACTTTCGTGGGAATGACGAAGAGTTGCGGGAATGATGGAAAGCTATGGGAATAACGAAGGGTTAAAGTAATCACGGGATGGTGTTCGCGGGAATATAAATTTAAATAATTCAAAAGGGTGTTATATGCAGCCTGCGGTTTATATTTTAGCAAGCCAACGTAATGGCACGTTATACATTGGCGTTACATCTGATTTGGTGCAACGTATTTACCAACATAGGGAGCATTTGATTGAGGGATTTACATCACGGTACAACGTTACTATGCTGGTTTGGTATGAACTGCATCCTACGATGGAGAGCGCAATTACTCGGGAAAAACAGTTGAAGAAATGGAACAGGGCTTGGAAATTGCAACTGATTGAAGAAAATAATGTTTCTTGGCAGGATTTATGGTTTGATATTATTTAGC # Right flank : CCAGACTGTTGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAATCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCTCGGCGTTCGCGGCGCGCCGCCCCGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGGGGGGGGGGGCGCAGGCGCAAACATATTCATACGCTATTGTAATGAACAGTCAAAAGCTGCCCGAGGTAAGGAATGGGAGCTCCCAAAGCAAGCACCGCCAAGCTACCTTTATTGCACAATTTAGTGGACCAAAAAAAAACTCTATTTTCTCATTCAATAATACCGATAACGTTGTTGCTAAAAAAGACGGTACTGTCGTTTTCGGCACAGCGACCTACCTGCCGCCCTACGGC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.29, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //