Array 1 4171-916 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAE01000047.1 Propionibacterium freudenreichii strain CIRM-BIA 513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 4170 29 100.0 32 ............................. GACCGGGATCGAGGTCCCCTTGGGGCATTCAG 4109 29 100.0 32 ............................. ACCAAGCCTGAATTCGCGCACAGGGATCCATG 4048 29 96.6 32 ............................C TGCGCGTGTGGGATGCCGAAGTGGCCGGGAAA 3987 29 96.6 32 ............................T CCCAGAAAACGGAGCGGCGATCGCTGACCCGA 3926 29 96.6 32 ............................T GCGGCGGTGAAGGGCACCGCCTTCGGGCTTGG 3865 29 96.6 32 ............................C TGGGTCCACGTAGCTGTCACGACAAACTCTAA 3804 29 100.0 32 ............................. CTCGGAGACAGGCTGACCTTTGCGGGAAGTCG 3743 29 100.0 32 ............................. GATCGCCAGGGCGATCACGTTTCCGACAGTCG 3682 29 100.0 41 ............................. CGCCCCCACAATCTGGCGGGCTGGGGTCCGGTNNNNNNNNN 3612 29 93.1 32 N...........................C AACGCCACTGGTGATCTGGCCAAGGGTCTTGT 3551 29 100.0 33 ............................. GAATTCACCGCGTCGCTGCCGAACTTGACCACA 3489 29 100.0 32 ............................. GTCAAGACCTCGGAACTGCGACAGGCCTACGA 3428 29 96.6 32 ............................C CGCCGACGACAAGCGGCTCGATCGCCGTCGAG 3367 29 96.6 45 ............................C GTTCCGACCTCAGACACCGACTGGTGGGATGTNNNNNNNNNNNNN 3293 29 89.7 32 NN..........................T CGATCTGTGCACGGATCCTGGCAGACGAGTCG 3232 29 96.6 33 ............................C TTGCTGTACGGCGTTTCGGTTTCGAACTGGGTG 3170 29 96.6 32 ............................C CAGCGGGCGTGGCCGGCACCATCACATCAGGG 3109 29 96.6 32 ............................T GGGCGGCGCTGGCCGTGACCCTGGTCGGCGTG 3048 29 100.0 32 ............................. CAAGAAGGGCCCCACCGGGAAGCAGCCCGATG 2987 29 100.0 51 ............................. TGTCCGCGAAGATGGGCAACAGCTTCTGNNNNNNNNNNNNNNNNNNNNNNN 2907 29 93.1 32 N...........................C AACGTCTACAAGTTCGGAGGCATCATGACCGG 2846 29 100.0 32 ............................. TCGGGTCGGAAGGATTCCAGCCATGAAAAACC 2785 29 100.0 32 ............................. AGCCAGCGAATACCACTGGCCGCGATTGGGGT 2724 29 100.0 32 ............................. AGGCCCCACCGGGAAGCAGCCCGATGGAGCCC 2663 29 96.6 33 ............................C GTTCAGCAACGGCCAGCCGATGACGATGTTCCG 2601 29 96.6 32 ............................T TCGCGAAGGCGACCGTCTCCAGCAGCCCTTGC 2540 29 96.6 32 ............................T CGATCGTGTGGCGCTCCGCGACGGTGGGGGTG 2479 29 100.0 32 ............................. TATTCGTCCAGGACGACGCTGGGGTCCCCGCC 2418 29 100.0 32 ............................. GTCAAACTGATCACCGGCGGCGACAAGTTGAC 2357 29 96.6 32 ............................C AACAAACCGACCTGCAGACCGGCGAACCGAGA 2296 29 96.6 32 ............................C AGTCCGCGACCTCGAAACCATCCCGACCGGCG 2235 29 96.6 32 ............................C CCAGTCGGCATCCACCAACACCGTCCGCCATG 2174 29 96.6 32 ............................T GGACCAGCGATTACGCCGACGGCTATCCGCCC 2113 29 96.6 32 ............................A AGATCAGGATTTAGCCTGTTGCCTTCCTCCGA 2052 29 96.6 32 ............................T TATTCTGGGTTCAGTTCGTGGCTTTCAAGTAA 1991 29 100.0 32 ............................. GGCGGCTCGAATCGCCCGAACGGACCTTCCGA 1930 29 96.6 32 ............................T GAGTAGCAAATCCTTGGGATTAATATTCATAG 1869 29 96.6 32 ............................C AATGCCACAACACACGTGGCAGGACGGACAGG 1808 29 96.6 32 ............................C GCCGCCCGACCCAGCAGGGTCGCCCGACCCGG 1747 29 96.6 32 ............................C GATCTCGACGGCGATCTCGGTGTTCATCGTGG 1686 29 96.6 32 ............................C GATCGCTGGGGGACTGAAATTACTGTTGACTG 1625 29 100.0 42 ............................. GCCAAGGAGGCCCTGCCGCCCGACGTCTACGNNNNNNNNNNG 1554 29 100.0 32 ............................. CGTGCCCGTGAGCGTGGAGCCCGGCACGCCGA 1493 29 96.6 32 ............................C TTGGAGGCAAAGTGATGAAATCACCATTCAGC 1432 29 96.6 32 ............................C TCCGGCGGCGCTCAGCCTGGAGCCCTATCGCA 1371 29 100.0 32 ............................. GGCCTGCAACGCCAGCAGGTGCAGCCCCGCAT 1310 29 100.0 32 ............................. GCCGCCCACGACGCGATTGACTCGCTGAATCT 1249 29 100.0 32 ............................. CACAGCCCAGTCACCGGCGCGCGGCTTGTAGG 1188 29 100.0 32 ............................. TCCTCGACGGAGATCAGGTCCTTGACGAGCCA 1127 29 100.0 32 ............................. ATAATAGGAACTTCCGAATTATTTTCGTCGGT 1066 29 100.0 32 ............................. CCAAGGTTGCGCAGGCGACCGCGCTCGTCCCC 1005 29 96.6 32 ............................C GCTTGATTCAGGTGGGCGCGAATGTCGGGGAT 944 29 82.8 0 ........................GGGTT | ========== ====== ====== ====== ============================= =================================================== ================== 53 29 97.6 33 GTTCTCCCCGCATACGCGGGGGTGATCCG # Left flank : TGTTCTCCCCGCATACGCGGGGGTGATCCGATTGAACATTCCCGTCTGGTCTAACCGGACAAGTTCTCCCCGCATACGCGGGGGTGATCCCTGGGTGGCCGCCGGTGTGGATGCAGCCCGGTGAGTTCTCCCCGCATACGCGGGGGTGATCCTTGGGCCTACAAGAAGGGTGAGACGCAGACCGCGTTCTCCCCGCATACGCGGGGGTGATCCTCTGTGGAGCCTGACAAGATCAAATGCGGAGCAGTTCTCCCCGCATACGCGGGGGTGATCCCGGAATGGCCGCCAGCCGGTCGCGCTCTTCTTGGTTCTCCCCGCATACGCGGGGGTGATCCGATCGCCACGGGCGCCCAGATCGCCGCCGATCTGTTCTCCCCGCATACGCGGGGGTGATCCCTGGGTCGAGACGTTGGTGATTCCGGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCTCGACGATGTGGACACCGAGATCAAGGG # Right flank : ACCCTGTTTTTTCGGACACCTGATGTGGCATGGCCGGTGGGTCGTGCGGGAAGGTGTTGTCATGGGTGTGGATCCGGAGCAGGTGCCGCGGAGGCGGCGGAAGTTCGCTGCGGAGTACCGCCACGAGGCCGCGAGGCTGGTGCTGACGTCTGGTCGCACGATCGCGGACGTCGCGAAGGAATTGGGACTCGGTGAGCAGTTGCTGGGCAAATGGGTGCGTGCGCAGAAAGAGACAGCTGCTGGTGATTTGTTGAGCGATGACGAGCGGGCCGAGCTGAAACGGCTCCGGCGTGAGAACTCGCAGCTGCGGATGGACAACGAGTTCCTGGAAAAAGCGGCGGCCTTCTTCGCGTCGAAGCGTCGGTGAACGAGAAATACTCACTGATGCGCGCGGAGAAGGCACATTTCAGCGTCGTGCGAATGGCCCGGCTGCTGCATGTCTCACGGTCCGGGTATTACACGTGGGTGAAGACGAGCGAACACCCTGCCGCATCGCCTCG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCATACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4984-4274 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAE01000047.1 Propionibacterium freudenreichii strain CIRM-BIA 513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 4983 29 96.6 32 ............................G ACACTGCAACAACAGTCAGACGAGAAAGACAA 4922 29 100.0 32 ............................. GCACGTGCAGCCACATTGGTCTGCATGACACG 4861 29 100.0 41 ............................. AGCCACAGCAACACCAGCGGGGGCAGGAGGAANNNNNNNNN 4791 29 96.6 32 N............................ GTTCGTCCCAGCTTCTGGATGCCCACCGGGGG 4730 29 100.0 32 ............................. CTTGACCCCGAAATCGGCGGTGTCGGGACGAT 4669 29 96.6 32 ............................G ATTGAACATTCCCGTCTGGTCTAACCGGACAA 4608 29 100.0 33 ............................. TGGGTGGCCGCCGGTGTGGATGCAGCCCGGTGA 4546 29 96.6 32 ............................T TGGGCCTACAAGAAGGGTGAGACGCAGACCGC 4485 29 96.6 32 ............................T CTGTGGAGCCTGACAAGATCAAATGCGGAGCA 4424 29 100.0 32 ............................. GGAATGGCCGCCAGCCGGTCGCGCTCTTCTTG 4363 29 96.6 32 ............................G ATCGCCACGGGCGCCCAGATCGCCGCCGATCT 4302 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 12 29 98.3 33 GTTCTCCCCGCATACGCGGGGGTGATCCC # Left flank : GGCTCACCGATGACGACTCCGACCATGAGTGGGACATTGTCGAGCTTTGGGATGACAAGGACGGGGTCGTGCCGGGTGGCCGGTCATGGAGTGAACAGCCATGATGGTGTTGGTGCTCACTGCCTGCCCGGCCGGTTTGCGCGGGTTCGTGACGCGGTGGCTGCTGGAGATCAGCCCGGGAGTTTTTGTGGGCAAAGTCTCTGCGCGGGTGCGTGAAGCCATTTGGGCGCGGGTTGAGGACCTCTGCCAGGACGGACGAGCAATTCTGGTGCACACGGCGCGGAACGAGCAGGGCTTTGACTTCAAAGTACATAGGCACGATTGGGAAGTTGTTGATCTGGAGGGCCTCAAACTGATGCGTCGCCCCAGAACCCCGGATCGTGCGTCCAGTGGCATGCGCTCCGGATGGAGCAACGCTGCCAAGCGACGACGGTGGGGTCGCTGACTCGGAACGTCCTCGTATCGGCCTTGAGCGCCAGTAACATGCGTAGTCAGGAAGT # Right flank : TGGGTCGAGACGTTGGTGATTCCGGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCTCGACGATGTGGACACCGAGATCAAGGGGTTCTCCCCGCATACGCGGGGGTGATCCGGACCGGGATCGAGGTCCCCTTGGGGCATTCAGGTTCTCCCCGCATACGCGGGGGTGATCCGACCAAGCCTGAATTCGCGCACAGGGATCCATGGTTCTCCCCGCATACGCGGGGGTGATCCCTGCGCGTGTGGGATGCCGAAGTGGCCGGGAAAGTTCTCCCCGCATACGCGGGGGTGATCCTCCCAGAAAACGGAGCGGCGATCGCTGACCCGAGTTCTCCCCGCATACGCGGGGGTGATCCTGCGGCGGTGAAGGGCACCGCCTTCGGGCTTGGGTTCTCCCCGCATACGCGGGGGTGATCCCTGGGTCCACGTAGCTGTCACGACAAACTCTAAGTTCTCCCCGCATACGCGGGGGTGATCCGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCATACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //