Array 1 428022-429207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSJ01000001.1 Salmonella enterica strain CVM 43818 43818_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 428022 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 428083 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 428144 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 428205 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 428266 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 428327 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 428388 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 428449 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 428510 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 428571 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 428632 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 428693 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 428754 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 428815 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 428876 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 428937 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 428998 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 429059 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 429120 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 429180 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 445877-447492 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSJ01000001.1 Salmonella enterica strain CVM 43818 43818_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 445877 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 445938 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 445999 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 446060 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 446121 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 446182 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 446243 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 446304 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 446365 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 446426 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 446487 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 446548 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 446609 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 446670 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 446731 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 446792 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 446853 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 446914 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 446975 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 447036 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 447097 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 447158 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 447219 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 447280 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 447341 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 447402 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 447463 29 100.0 0 ............................. | A [447490] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //