Array 1 86049-86754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVM010000001.1 [Clostridium] symbiosum strain BSD2780120875b_170604_D12 NODE_1_length_125166_cov_24.0779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 86049 33 100.0 33 ................................. ACCCTGACACCAGTTGCATATAAAAATTCAATC 86115 33 100.0 34 ................................. CCCTTTATGCACGTATATCCGCTGTTGCCAGTAC 86182 33 100.0 36 ................................. GATGATGGACAGTAATTCATTCAGGAGATACCAAAC 86251 33 100.0 35 ................................. TCCTGGAGCTGGAGCTGGTCGAGATGCTTCAAGGA 86319 33 100.0 34 ................................. ATCCAGCTTGAAGACATCCTTAATTTTCTGCCAT 86386 33 100.0 34 ................................. TTTTAGTACGATATCGCTTTACGTGCGTCTCATA 86453 33 100.0 34 ................................. CGTACACCCAGACGGTAAGTGTGCCAGGAGCTAC 86520 33 100.0 34 ................................. TACCTTGTAGCTGGCGCAGACGCTTCTCCAGCCG 86587 33 100.0 35 ................................. CCGGCTGATATTCGATATCCAGAGGCAGCAGGATA 86655 33 100.0 34 ................................. TGGTTTTTATTTGAACAGCACCAGCATGAAACGC 86722 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 11 33 100.0 34 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : ACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATAGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGATAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATCGTACGGGAAAATTTAGCACATATGGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAGCTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATACAAGGATAATTGTGTATTTTTGCT # Right flank : TTCAACGACTGGAAGTTGGAAGCACTTATGTCGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTGCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATTAATAAATTTAGAGAGGAAAGAGATTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCAGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAAAATTTCATTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 87502-88469 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVM010000001.1 [Clostridium] symbiosum strain BSD2780120875b_170604_D12 NODE_1_length_125166_cov_24.0779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 87502 31 100.0 36 ............................... ATTTCGAAGTTTCGTGGCTGGCGTGAAATTAACGGT 87569 31 100.0 37 ............................... ATCGAAGAAGAAGCCGGGATATAAAGTGCCGGACCCG 87637 31 100.0 36 ............................... ATTGTTTCCAGTTATATTTCCAGTTTACATCATCAA 87704 31 100.0 37 ............................... ATAGTTTCCGGTGAATATTTTCCATCCTGTCCACGTA 87772 31 100.0 35 ............................... ATTGACACTTGATTTTGTTTTTGCCATAACTTTTC 87838 31 100.0 36 ............................... ATCCAGAATCGCCAGGATGGACGGGATGTACTCGTT 87905 31 100.0 36 ............................... ATTTCATCAGTATGATATAACACGCCATCCACTTCC 87972 31 100.0 36 ............................... ATTATTTGGAGGGAATCCACCTGGTCATCTATCCAC 88039 31 100.0 35 ............................... ATTTCTTAGGTCCTGCAGCTTAACGCTTTCCAGCG 88105 31 100.0 37 ............................... ATTTCACATACTCCACAGCCGCTTTTTGGAGGATGGC 88173 31 100.0 35 ............................... ATGGAACATGTTCCATACATTCTTCCCATATTGCT 88239 31 100.0 36 ............................... ATCCTGCTGTCCCTGCACCTCAATCATTGTCTGCAT 88306 31 100.0 36 ............................... ATTCCCCAATCACAGGCACAATCTTCACCGTCTGTT 88373 31 93.5 35 ...A.......................T... ATGTCGTCGGCCGTTCCCGGAAGGCCGTCAGCTCT 88439 31 90.3 0 ..........T................TT.. | ========== ====== ====== ====== =============================== ===================================== ================== 15 31 98.9 36 GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCAGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAAAATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : AGTTTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATATGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCACCAAAACTAATTCAAAATAATGATTGACTTTTCAAACTGTAACAATTATACTTACAGTAAAGAGAGCAGAACATACATTTCCCAATAATAATAATATAACTAACACATAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATCATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAATCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGCAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACTCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATCGAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 75729-71766 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVM010000003.1 [Clostridium] symbiosum strain BSD2780120875b_170604_D12 NODE_3_length_86699_cov_35.482, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 75728 32 100.0 37 ................................ GCTTGCCAACGTTATTAAGTCTGAATATGGTGATTCG 75659 32 100.0 36 ................................ ACCTTTATTTTAGAGGACAGCCTTGAATCAGGAGCG 75591 32 100.0 34 ................................ ACCATTAGAAGGCGGGTTAGGCGGTGGCACATAG 75525 32 100.0 35 ................................ GTTTTCCCAGCGGTATAATTCAAACCAACCGTTCG 75458 32 100.0 34 ................................ GTTATCAGCCCCGTTTTCCCAGCGGTATAATTCG 75392 32 100.0 35 ................................ CGGCTTCAGCAGCAGGCCATCTTTGAAGTGGATGG 75325 32 100.0 35 ................................ CGCTGGAATTGATTGACAGAGTGAAATTGTTTTTG 75258 32 100.0 34 ................................ CGGCGTCAGAATGGAACCCATGCGATATTCTTCG 75192 32 100.0 34 ................................ TGCTGTTCTGCCGCATCAGCCACCGTTTTGTTTG 75126 32 100.0 37 ................................ CAGAAGGAGAAGGCCGCGACATTTACAGGAACCATCG 75057 32 100.0 34 ................................ TTCTTTCTGGTCTGCAATCCGGCCGATGGCAAGG 74991 32 100.0 34 ................................ ATTTTGTAGTGCCGGATAATCCATGATAATGGCG 74925 32 100.0 34 ................................ ATTATCAGCCCCGTTTTCCCAACGGTATAATTCG 74859 32 100.0 36 ................................ ATCATCCATATAGATAAAACCTTGCTCCAGATATTG 74791 32 100.0 34 ................................ TTTTTATATCTTTACACATGATATTTCAGCGCGG 74725 32 100.0 35 ................................ ACTGAAATTGACATGTGGAGATACACTTACTATGG 74658 32 100.0 35 ................................ ATGTTAGCTGTGTCTACTTCAGGGATAGGTGTTGG 74591 32 100.0 36 ................................ TATCCCAGTATGATGCATAGCATGTCTGGCAACCGG 74523 32 100.0 36 ................................ TATGTAATATGGGTTAATGATAGTAACCGGGTTTCG 74455 32 100.0 34 ................................ CGGCATGATGGGGAACATTCAGAAGGAATCTACG 74389 32 100.0 34 ................................ CTTGATAATATCTAACGGAATATAATGTGTACCG 74323 32 100.0 35 ................................ AAATGTCAATTTCCCAGTTCCAAAGTCCTTGCCGG 74256 32 100.0 36 ................................ ACATCCGATGGCTTTCGCTGTATCTGGGCTGTACCG 74188 32 100.0 36 ................................ AAATCCTATCCCCTGTCGGTATGGAATCCACCCATG 74120 32 100.0 34 ................................ ATTTTTCCAGTCTGTTCCCGCTACAGTAAACGCG 74054 32 100.0 36 ................................ AGTGCCATCTTCACTTTTTCCAGCATAGCCTATCAG 73986 32 100.0 35 ................................ TGTATGGCTTTCAGTATCTGGATTTCCTGCTGCAG 73919 32 100.0 35 ................................ CATCAGCTCCGCCTTCCATGAGTTGGCAGCGTTTG 73852 32 100.0 34 ................................ TGTCCAACGCCACAACCGTAATACTCCATGATAG 73786 32 100.0 36 ................................ GCGAACACACGCCCTTCATGATCGTACTGCATGATG 73718 32 100.0 35 ................................ CCCATATCAATGTCAAGGGGAACAGTAGTATATGG 73651 32 100.0 35 ................................ CCGTCACTATGTTTCCATCTGCACGAAGGAAGGAG 73584 32 100.0 34 ................................ CCGTGACTGGACTGACATGGATCAGGCGTTTGAC 73518 32 100.0 33 ................................ CGGTATGTAGGTTTTTGCCCTGCCAGCCCGAAG 73453 32 100.0 35 ................................ GTGTACCTTCTGCTGATAGGCAAGCGGTGTCTGTT 73386 32 100.0 34 ................................ CACAACGCCGTTTGAAAATGTAGCAGCATCCATA 73320 32 100.0 33 ................................ TTTAAATGTTCCAGTGCCGTCCTGACATTTTTT 73255 32 100.0 34 ................................ ATCTTACTTGACATATGTATTATTTCATCACTTC 73189 32 100.0 34 ................................ AGTTCGTGAAACGGGCTGATTACGGTTGTCATAC 73123 32 100.0 36 ................................ TGCTGTAAGGTGTAAGTTCCACCATTGCTGCAAGTT 73055 32 100.0 34 ................................ CTGTCTGCTCCGCCAGTGTTCCCGCCAATGTGGC 72989 32 100.0 33 ................................ TGTCTAGGAGCGCTTATTTGAGTCTGTTCGTAT 72924 32 100.0 34 ................................ ATTGTAGGCCGTCCAATCTGCTTGCCCGATGTAT 72858 32 100.0 34 ................................ TTAGTGGTTTCCGAATGATATTGGATAAGAATAG 72792 32 100.0 34 ................................ AAACGTATCATCGTCGCTTTTTACAATTGCTGTC 72726 32 100.0 36 ................................ CCGGCGTGTCTGAGCGTTCTGGTGTCCTACTCCGAG 72658 32 100.0 34 ................................ CAGTTCTCCATACTCGGTCTGACGTTCCATTACC 72592 32 100.0 34 ................................ CAATGCGATATTACTATCCATATGCCGCGAATTT 72526 32 100.0 34 ................................ CCATCACCGGCCGCTGCCAATACGCCCCCATGAG 72460 32 100.0 33 ................................ CTTGCACAATTCCGACACAAAATTAGGGTCGAG 72395 32 100.0 34 ................................ CAGATGCCAGCCCCTGGCTCCCCGGATATCTGCT 72329 32 100.0 35 ................................ CACATCGCCCGGATCATGCTGTTCCTCGACAGACC 72262 32 100.0 34 ................................ TGGCCGGATAACAGTCAATTATTTTACCGTCTTT 72196 32 100.0 36 ................................ TATGCCGGGACCGGAATAAGGGATATACGGGAAAAG 72128 32 100.0 35 ................................ TGTGGCGCATTGTACCATTTCTGCCCGACGGGAGT 72061 32 100.0 33 ................................ CCCTTCGCGATTAAGTCCGGGTCCCCAGCTGGG 71996 32 100.0 35 ................................ ACCATATGTATTTCTTAGAAACGGAACCAGTTCCC 71929 32 100.0 34 ................................ AATAACCTATATGGGAAGTTAGCCAGCAGTACAG 71863 32 100.0 34 ................................ AAACCGAAGTGCTGGTAAGACTACTTTTTTCAAT 71797 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ===================================== ================== 60 32 99.8 35 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : AAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCTG # Right flank : TTTATTGGCGCAAAGAGATGTGGATTCCAGTGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGTCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGAACGTGAAGTGTATAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //