Array 1 2950329-2949293 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831279.1 Paenibacillus sp. GM2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2950328 32 100.0 36 ................................ CCAATTCATTTGGGTTTAGTCATTGGTAAGGGCAGT 2950260 32 100.0 35 ................................ TGGATTATCACTCTGGTGCTGCGGAATTTAACTCC 2950193 32 100.0 35 ................................ ATCATCTTAAAATAAGAACAAACGTTCTGAAAGGT 2950126 32 100.0 36 ................................ CTGTATTGCTACCATTGTCCGTCGCTGATATAGACA 2950058 32 100.0 34 ................................ TTCCCCTTTCAATGCGATATCAATTAAATTACAG 2949992 32 100.0 36 ................................ ATCGTGTCATATCTCCGAGCATTAAAGGGATTGAGC 2949924 32 100.0 36 ................................ TCCCGTATACTGAATAGCAACCGTACCAGCATCATT 2949856 32 100.0 36 ................................ CGAACCTCGAACGGAAATACGAAGGATGGCTTGCGT 2949788 32 100.0 36 ................................ ATACCTTGGGTTAGCTGTTAGAAAATCACCGTACCC 2949720 32 100.0 34 ................................ TGGATACGCTCCGTCCTTCCAGTTTGCGAATAAT 2949654 32 100.0 35 ................................ CGATAACTTCGGTTTATGCCATGCCTGGTGGGTTG 2949587 32 100.0 34 ................................ CACCAAACATTGTCCCATAATCAATGGTATCAGC 2949521 32 100.0 34 ................................ ATAGCTGGAGTGATTAGCCTAATTAAAGGGGTGG 2949455 32 100.0 33 ................................ AGAACCCCGAGTCTGTAAAACAGCACTTGATTG 2949390 32 100.0 34 ................................ AGTTGTAGATGTAGTAGTGTTTCCTTCTTCATCT 2949324 32 87.5 0 ..........G.C..A.......C........ | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 99.2 35 GTCGCATCCTACACGGATGCGTGGATTGAAAG # Left flank : TCCGATTTTTCTGAAAGAGGGCTATATTGTCGTGAATTTTAACATTGAGACGATACGCGATGGGCAGATAGACAAGCCATATTTACAGTATGTTTATGCTCCGCTGATGAATCAGTGGCAGCAGATGGAAGGTTTCCGGCGCAAGATTACTGATCCGTATGGGCGTACCTTCACTATGATGGATGGAGATATAGTCTTTTACCACGCTGATCAATCCAGCCGAGATGATTTTCAATCAATGGTAACTCATTAAGAATAAGTTGCCTCATTTTTATGATGAAATAGAGGAAATTTGAGCAGATGAGTTGAATATTATTTTTATAATATTTGTCAACAATTTGGTGCGAACCTCAAGCGAACATGAAATCCCTAGGGGATTCGCACCATGAATATCATTGTTTTTATCCATGATTGGATTAAAATGTAATTTGTTAACCCTACAAATTAATTAATTCAATAAGAAAGTACCGATACGTGGACATTTTCTCCCCAAAATCGGA # Right flank : CCGTAAGGCCGCAGCGATTGAAAATAGCGCCCTTAAATCTTGTGTATCCCATTGGATGCGTCATTCAAACAACAAATGTCAAGCTAAACGATTCGCTTCAACCAAAAAGCTGATGCCCTTTTTTTCGGCATCAGCTTTTTTTCTGGATTTCATTCGGCTTTTTTATAGAATTACCAAATGCTTACGCGATTCTCGGGAGCCACGTACATGGCATCTTTTTCGGTTACTTCATAGGCTTTGTAGAACTCTGGGAAGTTTGAGACCGTGCGGTTTACACGTACCTTGTTCGCAGAATGGGTGTCGACGGTTGACATATACTTAGCGATTTCTTTGTTCATTGTAGTACGCCAGATTGTGGCATAACCTTCGAAATAAGCTTTGTAATCCGGATTTTCCGTTTTGGACAACACCTGAAGTGAAGCAGCCATACCGCCGAGATCGGCGATATTTTCGCTTACGGTCAGTTTGCCGTTGTTATACACGCCAGGAACGACTTCAAC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACACGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3458615-3458251 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831279.1 Paenibacillus sp. GM2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3458614 32 96.9 34 ........................G....... TGTCTTGATCCATAAAAATCACTCCCTTTTCTTA 3458548 32 100.0 33 ................................ TTCGCATATATAGCGCAGTCCTCACAAATTCAA 3458483 32 100.0 35 ................................ CTGCCAATTATGGTAGTTGCTTGGTTTATTGTACC 3458416 32 100.0 35 ................................ TCCGGACATAAGGAAATGATCGAACAATTGAAGTT 3458349 32 96.9 35 ........................G....... AATCCTAGCCCTTCCTTGGACATATGTTCAAAATC 3458282 32 96.9 0 .............................C.. | ========== ====== ====== ====== ================================ =================================== ================== 6 32 98.4 35 GTCACATCCTACACGGATGTGTGGATTGAAAG # Left flank : GATTGAAAGTGAGCTGCCGCGCAATGGAAAGGAAAAAGTGTAGTCGCATCCCTCGTGGATGTGTGGATTGAAAAGGATCTGCAGGTGGTCAACACACCAGCTTCTTTTAGTATGGAAGAGCTTGCTCTATAGAAGGTACGAGCTCTTCGCAGGTAAATAATTTGCGGTGATTACTACCCACTGAACTATTCGCTGCTGAATTTCCATAGAAACCAACTAAAACCAGACAGTCTTTAATTAAGAGTCAAACATTGAGTTGGCTAGTGGCATTATTCATTATGGTAGAATAGAGAAGAATGATAGAAAGTTGAATATAGCTCTAGGCATTTCAATGATTTTCGCATAACAATATGGTGCGAACCCTAAGCGAACATGAAATCCTTGGGGAATTCGCACCAAATATTTTTTTGTACCCATCCATAATTGGAATTAAAATCAATTTTCAAACGCTGTAAAGTTTTTAATCAATAAGAAAACACCGAATTTGTATCAAAATCGGA # Right flank : TCTGTGAGGGAGAAAACGAGAAGCGGGCACTTCTCGTCAGACCTGACACATATATTGATGGATCTATAGTTTCAAATATGTTTTGACCGTTTTTGTCACATCCCCCAGTAGCTGCGCCCATTCAAACCCTGCTATAATATATAAAGTTACTAGTAAATATATAAAGAAGGTCGTTCAGCATGAAGAAAATTGAGAGATCAGCGGTTGAGCAGGAGCTTCGCAGATTTGTTGGGGCGAACGTTTATGTGCATAGTGAGGCGACGTCGTATGTGTTTGTCCGTAATTTTACGGTGCAGTTAACGGAGGCTCATATTGCCGGGGAGGGGCCGTATCGTGTGGCGCTTCGGTTCAACGGTGACGGTTGGCTTCGGATGGAGGCGCTGACGGATTATGAGGTAGATGATCAAGGGCGCCTGCTATTGGCTGGGTTTGATAACAAGGGGCGAATGGATGTCGCTCTTCATTTGGGAAAGGAGGCTTTCCCGGAATGAACAACCCTC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACATCCTACACGGATGTGTGGATTGAAAG # Alternate repeat : GTCACATCCTACACGGATGTGTGGGTTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCACCTCCTACACGGAGGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.70,-7.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3459544-3459041 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN831279.1 Paenibacillus sp. GM2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3459543 32 100.0 34 ................................ GAGTCTATGGAGCGAAATACTGACATTGACCAGT 3459477 32 100.0 35 ................................ TACGCCCTGAGCCTTTAACGCTTCCCACCCGCAGG 3459410 32 100.0 34 ................................ GATTACATGTACAGAAAAAGTTATCCTGGTGGAA 3459344 32 100.0 38 ................................ GATCTCAATACACGAAGTGAATCATCCGGAGACAAAGC 3459274 32 100.0 36 ................................ GACAAAGACAAAATCTTTGTTCTCTTTGACTTTAGT 3459206 32 100.0 37 ................................ TACCTGAAAGATGTTTTACAAATAAGTTCTTGCTATA 3459137 32 100.0 33 ................................ TGAGCTGCCGCGCAATGGAAAGGAAAAAGTGTA 3459072 32 93.8 0 ...................T...........A | ========== ====== ====== ====== ================================ ====================================== ================== 8 32 99.2 35 GTCGCATCCCTCGTGGATGCGTGGATTGAAAG # Left flank : CGCGGCGATCTGGATGAATATCCGCCCTTTCTATGGAAGTAGGTGTAGACGATGCTAGTATTGGTCACATATGATGTAGGTACGACGCATAGCACTGGACAGAGAAGGCTGCGGCAAGTGTCCAAGTTATGCCAGAATTATGGACAACGTGTGCAGAACTCCGTCTTTGAGTGTGTAGTAGATGCCACCGAGTTTGAAGTCCTGAAAATGAAGCTGATCGATATCATCGACGAAGAGCAGGACAGCCTACGCTTCTATCAGCTTGGAAACAACTATAAGAATAAGGTCGAACATATTGGGATTAAGGAGTCCCTCGATCTTGAGGGCCCCTTAATCCTGTAGTGCGAACCCCAAGTGAACATGATTTCCCTGGGGGATTCGCACCATGAAAATCTTTGGATTTATCCATTAAAGTAATAAAATGTAATTTTATCGCCCCTGTGAAGTTAGTTTTTGTATAGAAAATGCGATTTTCGAGCTCTTTTTACTCGAAAATCGGA # Right flank : GGATCTGCAGGTGGTCAACACACCAGCTTCTTTTAGTATGGAAGAGCTTGCTCTATAGAAGGTACGAGCTCTTCGCAGGTAAATAATTTGCGGTGATTACTACCCACTGAACTATTCGCTGCTGAATTTCCATAGAAACCAACTAAAACCAGACAGTCTTTAATTAAGAGTCAAACATTGAGTTGGCTAGTGGCATTATTCATTATGGTAGAATAGAGAAGAATGATAGAAAGTTGAATATAGCTCTAGGCATTTCAATGATTTTCGCATAACAATATGGTGCGAACCCTAAGCGAACATGAAATCCTTGGGGAATTCGCACCAAATATTTTTTTGTACCCATCCATAATTGGAATTAAAATCAATTTTCAAACGCTGTAAAGTTTTTAATCAATAAGAAAACACCGAATTTGTATCAAAATCGGAGTCACATCCTACACGGATGTGTGGGTTGAAAGTGTCTTGATCCATAAAAATCACTCCCTTTTCTTAGTCACATC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCTCGTGGATGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //