Array 1 28685-27128 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZN01000016.1 Salmonella enterica subsp. enterica serovar Singapore strain BCW_2780 NODE_16_length_131569_cov_2.66673, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28684 29 100.0 32 ............................. CTCAAAATATTCTCTTGATTTTAAACATTGAG 28623 29 100.0 32 ............................. ACGCCCCTTTTTCAGGTGTTGATATTGCCGGG 28562 29 100.0 32 ............................. ACGAGCGAGCCGGCATCCGTGAGGCCCGTGTC 28501 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 28439 29 100.0 32 ............................. TCTATCTTCAAATTGTTCTGATGGTGGAAACG 28378 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 28317 29 100.0 32 ............................. TGCCTGGACACTGTTGCGTCAGCGGGAATACA 28256 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCTGGATCACC 28195 29 100.0 32 ............................. GGAGCTGAGGCATTATCATTTGCTCAGGATAG 28134 29 100.0 32 ............................. TCGTAGAACAGCTCTGCTTCCTTTGCGGAGAC 28073 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 28012 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 27951 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 27890 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 27829 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 27768 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 27707 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 27646 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 27584 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 27523 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 27462 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 27401 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 27340 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 27279 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 27218 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 27157 29 93.1 0 A..............A............. | A [27130] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCTTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46276-44967 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZN01000016.1 Salmonella enterica subsp. enterica serovar Singapore strain BCW_2780 NODE_16_length_131569_cov_2.66673, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46275 29 100.0 32 ............................. GGCCAGCCGAGGTCTTCGGAAACATACCCATC 46214 29 100.0 32 ............................. CCGCTCTGAATAGTTGACCACTCAGACCACGC 46153 29 100.0 32 ............................. CAGCCGGACGGCACAGGGTTAACCGATATTTA 46092 29 100.0 32 ............................. ACACCCGTCGGGGGAAGCAAGGCGGACGGGAC 46031 29 100.0 32 ............................. GATAGCGCCTCGCCCACAGTTGCAGTGTTTGC 45970 29 100.0 32 ............................. GCCCCGCGTCTGTTTTGGCTCGTCGGGCCAAT 45909 29 100.0 32 ............................. GGCGTGCGCACTCAGTGCGTACTGGACGCATT 45848 29 100.0 32 ............................. CCCCCTCTCATTAAATATTTGGCGTAATCACG 45787 29 100.0 32 ............................. ACAATGTGTGCTCGTCCCATACGCGTTTGCTG 45726 29 100.0 32 ............................. CGTCAGCGCGGCATTGAGGCTGGGGACCGCCC 45665 29 100.0 32 ............................. AAAAAATCTGGACCCGTCACGCCTGATTAATA 45604 29 100.0 32 ............................. ACGTTATGGTTATCCATGAGGTTGCACGCGAG 45543 29 100.0 32 ............................. TAATCGCGTGCTTGGATTGTGGCGCATCCTCC 45482 29 100.0 32 ............................. AGATAAAATCAGAAATTTACGCCGAACTTCAA 45421 29 100.0 32 ............................. AATCCGTCGCTGCTGGTCGTCGGCAAGAACAA 45360 29 100.0 32 ............................. CTGGACTGATCAGGCTGGAAATTGGTCAGATA 45299 29 100.0 32 ............................. CCTGATTAATCGGGGGATGTAATGGCAAACGA 45238 29 100.0 32 ............................. TATTCAGCGTCAGATGAGCCTATGTCGCAACG 45177 29 100.0 33 ............................. CGCCCTTTCATCCGTTCAGGTGGATTTCATGAC 45115 29 100.0 31 ............................. ATGTTTAATTTTGTAGCCGCTACCTATCGCC 45055 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 44994 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //