Array 1 32360-30462 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTD01000043.1 Salmonella enterica subsp. enterica serovar Infantis strain inss20 scaffold_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32359 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 32298 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 32237 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 32176 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 32114 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 32053 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 31992 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 31931 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 31870 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 31809 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 31748 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 31687 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 31626 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 31565 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 31504 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 31443 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 31382 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 31321 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 31260 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 31199 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 31141 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 31080 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 31019 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 30958 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 30897 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 30836 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 30775 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 30714 29 100.0 11 ............................. CGGCCAGCCAT Deletion [30675] 30674 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 30613 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 30552 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30491 29 93.1 0 A...........T................ | A [30464] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8373-7307 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTD01000097.1 Salmonella enterica subsp. enterica serovar Infantis strain inss20 scaffold_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8372 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 8310 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 8249 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 8188 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 8127 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 8066 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 8005 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 7944 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 7883 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 7822 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 7761 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 7700 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 7639 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 7578 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 7517 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 7456 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 7395 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 7334 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //