Array 1 12934-12700 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV812116.1 Neisseria sp. HMSC055H02 Scaffold798, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12933 36 100.0 30 .................................... AGCAGGATTATGCCGTCCTGAAGCGTCTAT 12867 36 100.0 30 .................................... TTTCTGCAACTGCTGAAACGCCTCCCAATT 12801 36 100.0 30 .................................... TTTCCCTTCGGCATTAATAACGGGCGCGGT 12735 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AGTTGTAGCTCCCTTTCTCATTTCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTTCTCATTTCGCAGTGCTACAATAAACTATGCAATTCATCATCAACTAAAAGGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCTTTTAAAGAACAATAAACGGCGAACCGTCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCACACTTGATGCTATGAATGGCATCGCAACGTTGTAGCTCCCTTTCTCATTTCGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTTCTCATTTCGCAGTGCTACAATAAATTGCTGAAGCATTAGATGTGTCGGTGG # Right flank : ATCTCAGCGGGGAATCCTTATTTTATAAGGATTCCCCGCTTTCTTTTGTCTAAAAAACGGAGACTAGAACAGCAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTGAGTTCACCTAAAAGCAGTTTCATGGCGGCAAACTGCTTTTCCGTTACTTCCAAACAGCGTATCGAGCCTTCTTGCGGCAGGTTGGCGCATAGTCTGTTGTGGTGTTTCTGCAACGCATCTCTGCCTTTGACAATCCGGCTGTACACGGAAAGTTGCAGCATTTGATAGCCGTCTTTCAATAGGAAATGTCGGAATTGGTTGGCGGCTTTGCGTTTGGAGACGGTGGTAACCGGCAGGTCGAAAAAGACGATAATCCGCATAAACTTTGCCTCACTCATATTGATATTCTTTCAAAGGCAGGATTTCGGGCAGTTTCAGCAGCCTGGCGTTTTTTGCGACGATGCTCGGCTGGAATGAGGCAATCATTTTGTCTATGGCTGCTAGTGTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 2 13316-13082 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV812116.1 Neisseria sp. HMSC055H02 Scaffold798, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 13315 36 75.0 30 NNNNNNNNN........................... AAACTATGCAATTCATCATCAACTAAAAGG 13249 36 100.0 30 .................................... CTTTTAAAGAACAATAAACGGCGAACCGTC 13183 36 100.0 30 .................................... CACACTTGATGCTATGAATGGCATCGCAAC 13117 36 75.0 0 ...........................NNNNNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 87.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCTTTCTCATTTCGCAGTGCTACAATGAGTTTTTCAGCGGCTTCGCACACAAAAGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGGAATTGATGTGCCATGCTTTGAAGTCCGGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAATTGCCTCTTTCAAGGGGCGTAATATATAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATTAGCCAGATTGCAGCCTACACCCTTCAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAGGTGGCGGGCTGAAAGGCTTTATTATCAAGTTGTAGCTCCCTTTCTCATTTCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTTCTCATTTCGCAGTGCTACAATAAATTGCTGAAGCATTAGATGTGTCGGTGGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAGCAGGATTATGCCGTCCTGAAGCGTCTATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTCTGCAACTGCTGAAACGCCTCCCAATTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTCCCTTCGGCATTAATAACGGGCGCGGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATCTCAGCGGGGAATCCTTATTTTATAAGGATTCCCCGCTTTCTTTTGTCTAAAAAACGGAGACTAGAACAGCAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTGAGTTCA # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [9-9] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 15046-13463 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV812116.1 Neisseria sp. HMSC055H02 Scaffold798, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================== ================== 15045 36 100.0 30 .................................... CGAGAACGCCATCGCCCGCTACATAAAACG 14979 36 100.0 30 .................................... ATAAGAACTTCCGAAAACAAAGAAGAAAAA 14913 36 100.0 30 .................................... ATAAACCATCATTGCCGCCATAAAATAGGC 14847 36 77.8 83 ............................NNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 14728 36 75.0 30 NNNNNNNNN........................... TAAGACCAACAGCGCGAGGAAACGCAAAAT 14662 36 100.0 30 .................................... GGAATTGATGTGCCATGCTTTGAAGTCCGG 14596 36 100.0 30 .................................... CTGCAATCGTATTGCTCAGGCTGTAAACCT 14530 36 100.0 30 .................................... TTACGACTTTCTGCTTGGCAAACTGCGTAT 14464 36 75.0 83 ...........................NNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 14345 36 77.8 30 NNNNNNNN............................ TATGCCGCTGCTTGATTTGCTACATAACAT 14279 36 100.0 30 .................................... AACTGGAAATAACGGACGTTGATGTAAAGG 14213 36 100.0 30 .................................... TCCATATACGATGCCTGTTTTGGAGGGATA 14147 36 97.2 30 A................................... TAATCAAAATGGCGTCAGAACTTGGCGGTA 14081 36 100.0 30 .................................... TCGAATCCGGTGCGAACGATCCGATGGCGA 14015 36 100.0 30 .................................... GGAATTGATGTGCCATGCTTTGAAGTCCGG 13949 36 100.0 30 .................................... GCGGACGATTTGCGGTACGCCAAACGATGG 13883 36 77.8 85 ............................NNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 13762 36 80.6 30 NNNNNNN............................. GAGTTTTTCAGCGGCTTCGCACACAAAAGA 13696 36 100.0 30 .................................... GGAATTGATGTGCCATGCTTTGAAGTCCGG 13630 36 100.0 30 .................................... AATTGCCTCTTTCAAGGGGCGTAATATATA 13564 36 100.0 30 .................................... ATTAGCCAGATTGCAGCCTACACCCTTCAA 13498 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================================================================== ================== 22 36 93.7 38 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CTGCTCAATCAGCGCGACCGTTTCATCGATTTTTTCCTGGGCAATCGGGCGTTTGTGCAAAGCCCGTTCCAAACTGGTTCTCAGCTTGTGCGGATTAAACGCCACGCGCGTACCGTTGGATTTAATCACCTGCGGCATCCGCATTTCGACCGTTTCAAACGTACTGAACCGCTGCCCGCACTCCACGCAACGGCGGCGGCGGCGGATACTGTTCGTCTCTTCCAAGAGCCGCGAATCAGTGACTTGAGTATTGGGATGCTGACAAAACGGACATTTCATAAGTTTTTGAATTTATTTGTTTGTGAAACGGAATTGTAGCCGATTGAGTTATTCCCGTATAGTCGGTAGGTTTATTGAGGGTTGAAGAGGTCGTCTGAAAACGGAAATTCGAGCTTTCAGACGACCCTGCAGGAAATAATATGCGGTGCCAATTTCTGATTTTATTCTTTCCTATTTTGCAGTGCTACAATGCATCGAATGACGCATACTGACTTGTATGA # Right flank : AGGTGGCGGGCTGAAAGGCTTTATTATCAAGTTGTAGCTCCCTTTCTCATTTCGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTTCTCATTTCGCAGTGCTACAATAAACTATGCAATTCATCATCAACTAAAAGGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCTTTTAAAGAACAATAAACGGCGAACCGTCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCACACTTGATGCTATGAATGGCATCGCAACGTTGTAGCTCCCTTTCTCATTTCGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTTCTCATTTCGCAGTGCTACAATA # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.53, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [15-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA //