Array 1 1030586-1030169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENHO010000001.1 Actinoplanes sp. LDG1-01 NODE_1_length_1030630_cov_26.018172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================================================= ================== 1030585 25 100.0 35 ......................... GTGGTGGTCGCTGGGCTCGGCGGTTTCAGCGTTCC 1030525 25 96.0 36 ...................T..... TGGCAGTGTTCGCTGGGTTCGGTGTTGCGTGGAGCG 1030464 25 100.0 35 ......................... GTGGTGGTCGCTGGGCTCGGCGGTTTCAGCGTTCC 1030404 25 92.0 36 ...................T..C.. TGGCAGCGTTCGCTGGGCTCGGCGGAGCGTGCATCC 1030343 25 92.0 71 .........A.........C..... GAGGGCGTATCCAGCTTGGCCGGCTGGGACGAGCGAGCGTGCGGCGCCTGCATTTCTCGGCCGTTGATGGG G [1030321] 1030246 25 88.0 27 ............T......C....T GTGAGTGCCCACCCGGTCCGCTGTTCC G [1030223] Deletion [1030195] 1030193 25 76.0 0 ........CA.........C..GGT | ========== ====== ====== ====== ========================= ======================================================================= ================== 7 25 92.0 40 GATGTGAGTGCTCACTTACGTGTTG # Left flank : TACTTGTTGTGGCAGTGTTCGCTGGGTTCGGTGTTGCGTGGAGC # Right flank : GGTGACGGGATCAAGAGACGGTGAGCACGACCTGGCCGTACCGGGAAAGGCGGTGCTCCCCGTCATCGGTCGCGGTCAGGGTGAGGATGATTCGCTGCCCGGCTGTGGCGTCGGCGGGCACCGTGACGCGGGCCGTGCCGTTGGTCGTCGCGGTGACGGTCGGGGCCGTGGTGACGGTGCTGGCCTCGGAGTAAACAGTCCATGTGGCGGTCACCCGGTCGCGGTCCGGGTCGGTGACTCGGGCCCGGACGATGACGGTCTGACCGGGACGCGCGGACAGCGACGGCTGGCTGATCCGTACGGCCGGGGGGTGGTTGGCCTTGCCGTAGGCCGGGGTGACGCCCCAGTCGGCGCGGGCCGCGAAGTCGTCCTGGGCGGCCGGCACCCAGCGGTAGAGCGAGTACGCAGGTTCCGCCCGGCTCGTGACCGGATTGAGGTCGCCCTGCGGGGTGTAGAGGTTGGGGGTCGTGCTCGCGAAGCGTCCGCCCCAGCTGCCGAAG # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGTGAGTGCTCACTTACGTGTTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 144570-145025 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENHO010000019.1 Actinoplanes sp. LDG1-01 NODE_19_length_145174_cov_36.291609, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================================== ================== 144570 25 80.0 28 .A.T........G..T.......G. GGTTGGGGTGGGGAGCGCCGCGTCCGTT 144623 25 100.0 34 ......................... ATAGCTGCCGGCGGGCGGGCCGGCTCGGCTCACG 144682 25 100.0 31 ......................... GTTTGGGGGCGGGCTGGTCGGCTAGCTCACC 144738 25 96.0 31 ............G............ ATGGGTGCGGGGCAAGTCGGCTCGGCTTGCC 144794 25 96.0 48 ........................A GTTGGGCGGGTGGGCCGCCTCGGTCTGCGAGCGGTCGCGTCGCCTCAT 144867 25 96.0 30 ............G............ CTGAGGGCGGGCTGGTCGGTTCGGCTTACG 144922 25 92.0 54 G..........G............. GCCGGGCGAGTGGGTCGCCTCGGTTTACAAGCGTGGTCGGGTGCCGTGTTCGTT 145001 25 92.0 0 G......................C. | ========== ====== ====== ====== ========================= ====================================================== ================== 8 25 94.0 37 AGCGATGTGAGTACTCACTTACCTG # Left flank : CCCTGGCTGACCTGCGCTACTGGAAGGCCGCGGTGATCGTGCTGACGCCGCAGCTGCGCGACACCGAGATGCTGCGTGCCATGACCGGCCTGCTCGGCTTCCAGCCGACCTGGACGGGCGGCGCCTGGGTCTGGGACGTCCGCCACCTGGTCGACAACCCGAACGCGGTGCTGACCGGCCCCGACATCGGCTGAACACAGAAAAATGGGCGGCCCCTTCAACGGGGCCGCCCATTTTTTATCGGTCAGCGGCGGCGACCCTGCAGTTTGGTCAGCAGGCTGCGCAGCTTGCGCTGATTTTCGGGCTTGGCCAGCTGGCGCTGACCCTGCTCGATCATGCGCCGGCCTTGCGGGCTGGACAGAAATGCGCGAAGACGCTGAGACAGCGACGGCATCCGTGACTCCTTTCGTCGAGATCGGCGAGTTGAACACGGACTCTTTGAGGGTGACACGCTTTCCTGACAGCCAGTTGTATGCCCAGACCCCAACTGGCGGAACCTC # Right flank : GTTGGAGGTGGTGGGGCGCCGCGGGTCGCGTCCACCGAAGTGGTGTATGACCTGGTCTTTCCCGGCGAACTGAGGCGGCCACCGCAGATCCTTCGGATTGTCTAGATCACGAAGGAGAGACCTGCGATGGCCGCAGAACCGAGTCTGAA # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCGATGTGAGTACTCACTTACCTG # Alternate repeat : AGCGATGTGAGTGCTCACTTACCTG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //