Array 1 145529-146230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAISN010000002.1 [Clostridium] scindens strain MSK.5.24 NODE_2_length_642187_cov_249.102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 145529 33 100.0 34 ................................. ATAAGAAGCAAATGGCCTATCACTCATAAGAGTA 145596 33 100.0 35 ................................. CCTGCCTATTAAGGAGGATTAAAAATATGAATATA 145664 33 100.0 32 ................................. TCCACGCTGATCGAGTCGGTCCTTCCCGTCGT 145729 33 100.0 34 ................................. TATGATGCAAAAGAATAAGAAAGGTGACGCTGCC 145796 33 100.0 34 ................................. CTCAATGTCCATGAAGCCTTCCTCGTCTGCTCCT 145863 33 100.0 36 ................................. ATACTGTAACATCAGCCATTCCAGCACCAACACATC 145932 33 100.0 33 ................................. TTTCATATTAGATTATTTTAATAATATACAGTC 145998 33 100.0 34 ................................. TTTACAAGCGTTTTTTCATTTCCCTGCTGTCCCC 146065 33 100.0 33 ................................. GTGTCATTAAGATAGGCAAAGTTTATAGAATCC 146131 33 100.0 34 ................................. TTGGATATGATCTATTAGGTCCTGATAGTTTTTC 146198 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 11 33 100.0 34 GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT # Left flank : TAAAAAGCGCCTCTAAAAAATATAAAGATTGTGAAAAGGCTTATGGGTTTGACATGGAAATTCCCAATAGAAAAATGATTGTGCGAAATGGAAAAGAAGTAGAACTGCCTGCTAAGGGCTCATATTCTGATGAGAAGACCAAGCCGTGGAGTAAATGGTCGGAAGAAGAATATGATGATTTCCAAAAAGAATTAAAAAAGAGGATAAAAGATAAATTTCCAGGGACGGTTCCGATAGAGTGGGAAGGATCAGCCTGGATCGAAATAGCGAAAAAGCGGAAATAATTGTGGGCTTGGGGCTGGTTTGAAGAAATTGGGAATATGGTTCAGGTGCGAATGGTAAGTGCACATAAAATGTGTGGGGGATTCGCACCTGGAAAAAGGGGTTAATTTGGAGAAAAGGTTAGAAAAAATTAATTTTAAAGAAGGATTTGCTTGAGTTATTGTGGGTTTTGTGTGTAATATGTAAGTGAGCAAGAGGTATTTTTGTGCGTTTTTGCT # Right flank : TTTTTTGGCTGTTACGGAATGAGGATCGGGATAGCTTCCCTCTCGAGGTAAAGTGGATTGAAATTCCTGGTAACTGGTGCCATATGAAAAAGATGTTAATGAACTTCGCGGCCAATACATGATATATCCTAAAATACATAAAATCCTTTGTGAAAAAGGTTATGCTGTAAGCATTGCTTCCCTTAAGATTATTATGCAAAAGGAAAGAGCACGGATGTATGAGCATAGGAAGAAAGCAAGGAACAGTCTAAATTTATTCAGAGAAAATCTTTATGTCAATTAATTTATAAAAAATATAGAAGATGTTATAACGATACCTCAAAACAATATGAAGAAGTATTGAAAGAATATCCTCAACTAGGACAAATATATTCTTTGGTTAAAGATTTTTACAGTGTGATTTTTTCCAAAAAGCCAGAAATATTAGATGACTGGATAGAGTTTGCTCAAAAATGTGATATACCTGAATTACAGACATTTCTTGAAGGATCCTTTCGAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 271889-269211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAISN010000003.1 [Clostridium] scindens strain MSK.5.24 NODE_3_length_544919_cov_235.633, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 271888 32 100.0 34 ................................ ACGAAATTCCGAAAAGCAACACTGGAAGGGCAGA 271822 32 100.0 35 ................................ AAGCCTCTTGGATATTGCAGCGAAGACGGGATAGT 271755 32 100.0 33 ................................ GCTCTATGCCAAGGATCAGGCATATATCGTCTA 271690 32 100.0 33 ................................ CCGCCAGAACTTGCATATGTTCGGGCTTGCCCG 271625 32 100.0 34 ................................ ATCTGACGGCCCTAGAAATGTCGATGGCAGGGCA 271559 32 100.0 33 ................................ TTTAAGCACCTCAGATAGCGTATGCCCCGAGTG 271494 32 100.0 33 ................................ AAAATATATAATAGTAAAATAGTTTTAGATAAC 271429 32 100.0 34 ................................ CCGTCTGCTGGAATATTTTTCGTTTCCGTAGTCC 271363 32 100.0 35 ................................ CCATCAACGTACAGGTGCACGACCAGTCTGTCCTT 271296 32 100.0 33 ................................ CTCGTATCCCTTTATGGTTTTCTGCAAATCTGA 271231 32 100.0 33 ................................ TGTTGTATCAACATCGTGGTCGCAATAGAACTC 271166 32 100.0 35 ................................ AGTTCTTCGCCCTCCTTAATGAGAGCTTCGATATC 271099 32 100.0 36 ................................ TCGAAAAGGCTCAATCGCCTCCACCGGGTTCCCGGC 271031 32 100.0 33 ................................ AATAAGATCCACAGGGACATCATCGAATACAAT 270966 32 100.0 35 ................................ TGCTGTTATAGTTACCGGATAATAGTTCACCTTTT 270899 32 100.0 34 ................................ CGGCATAACGATGAGATTATAGTGCCTGGAAAAT 270833 32 100.0 35 ................................ TCTCCAGGTATCTTCCAGAGGATACGCTGGAGATT 270766 32 100.0 37 ................................ ATAAAGGGAATGTATGATAGGGGAAAGTTAGAGGAGT 270697 32 100.0 35 ................................ TTACTATTGTGAGCTGGACTGATGGTACAGACGAT 270630 32 100.0 33 ................................ TGTCTTAACTTGCATTGTCTCTGTAACAGACGC 270565 32 100.0 35 ................................ GATTATGCGGCTGTCAGCAAGAAATGGGCGGCAAA 270498 32 100.0 35 ................................ ATGTAAGCCGCCTGTAAAGGCTCGATTGTCTTACC 270431 32 100.0 35 ................................ CTATTGCTATACCGTCATAGAGAGAGAGCACGACT 270364 32 100.0 35 ................................ ATGTAAGCCGCCTGTAAAGGCTCGATTGTCTTACC 270297 32 100.0 35 ................................ AGCGTCTCAGTTTTATGACTGGTACGCCTGTGGAT 270230 32 100.0 34 ................................ GGATATGGACGAGGGACGGCGGCTTCTGGGAGAT 270164 32 100.0 35 ................................ TTGACTATGTGCAAAGTGTACGTTATATTAGAAAC 270097 32 100.0 33 ................................ TACCAGCAGGCGAAGAAACTCGGAAAAAAATTA 270032 32 100.0 35 ................................ GCTACCTACAGCCTGGCAAAGGAGGGGCTGGATAT 269965 32 100.0 34 ................................ ATTGGCGGCACCTTAGAAGGCGGACGCAGGAAAG 269899 32 100.0 33 ................................ GATACATGATTGACGGAAGGGCATTTTGCGTAG 269834 32 100.0 34 ................................ CGTTGATGCAAGCGGAGGCGTCTCTCCTCTTGCT 269768 32 100.0 34 ................................ AATACAGAGGTGATGCAGCAGACCGCTGTTGATG 269702 32 100.0 34 ................................ CTATAGCATGATGCGTACTATGCTCTCCAGCGAA 269636 32 100.0 33 ................................ AACGAGGATTTGCAGAAATGGGAACTAAAAAGA 269571 32 100.0 34 ................................ AAGATAATCACATCCTTTCTGTGCGACAGCGCAC 269505 32 100.0 34 ................................ GCAGATGCAACAGTCTTTGTTACGCATTGTGCTA 269439 32 100.0 33 ................................ GGTACATTTCCAAAGCCTTAATAATCGTATCTT 269374 32 96.9 33 .........................G...... ATGGCAAATGAAGCAAAGCGACTGATGGATCCA 269309 32 87.5 35 ..........A..C.A.......A........ TAAAGCATAGCCAGCAATGCTACAAAGTCAAATGC 269242 32 68.8 0 ....A.....ACA.....G..CAA....G.T. | ========== ====== ====== ====== ================================ ===================================== ================== 41 32 98.9 34 GTCGTTCCCCTTGTGGGAACGTGGATTGAAAT # Left flank : GGATGCGTATCCGCCATTTTTATGGAAGTGAGGTGGCTTTATGCTGGTATTGATTACATATGACGTTAATACAGAGACAGCGGCCGGTAGAGCAAGATTAAGGAAGGTTGCCAAGCAATGTGTCAATTATGGAAGGCGTGTGCAGAACTCGGTCTTTGAATGTATTCTGGACAATGCACAGTGTGTTATGCTGAAATCTACTTTGATGGAAATTATAGATGAAGAAGTGGATAGTTTGAGATTTTATTATCTGGGAAATAAATACAAAACGAAAGTAGAGCATGTGGGAGTCGATAAAGGGATTGCTGTGGATGAAACATTGATTCTGTAGTGCGAATATGAAGCACACATGAAAATCCCGGGAGATTCGCACCAAAAAAGTTGTACAAAAACTGTAAGTTATATTAGGATATTAATTAAATATCAAATCATATCTAAAGAAAATGTAATTTACTACAAAACATATTACTATTTTCTTTTGAAATTTGGATATATTTGCT # Right flank : ATTACCATAGTAGATATAGGCGCCCCTGTACAAGGTTGATCCACTTGTGAGAATCCGAATATAGATACCTCTTTATGGGCATAATAGTTTGATTGCTTACCGCAACAAAAAGCAAGGCCTATTTTTAAAACAAACCATACTACGAAGTTATTAAAAATTAACTAACATGTTTAATTCATAATGATACATTTAAAGGGGAATAAAGTGATTTTAAGCAGAAATGTGTAAAGATTTATCAGTTTTGCATATATAGAGCAAATGCCCATAGTTCAGGGCGGCGGAGATTTTTCTCCGCCGCCCTGATTACAATACCAAGCCAAGCACCTACATCGCAGCATTAATTGCAGCCACAGCGCCATCTGCCACGGCTGTTGCAGCCTGGCGTACCTGCTTGACGCGGATATCGCCAGCAGCATATACGCCGGGAATGGAGGTTTCCATTTTTTCATTCACCGGAATATATCCGTTGTCTAACTTAAGTTCCGTATATAATTCGGTAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGTGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : NA // Array 2 281907-280398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAISN010000003.1 [Clostridium] scindens strain MSK.5.24 NODE_3_length_544919_cov_235.633, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 281906 33 100.0 33 ................................. CTCATACATTTGACTGGAGTAAATACAGACCGA 281840 33 100.0 35 ................................. TCTTGATCTTAGTGATTTTAGTGCTATTTGGGTCG 281772 33 100.0 36 ................................. ATCTGCTCTATTCTCGCTTTCTGTTCTTCCGTAGCC 281703 33 100.0 32 ................................. TCTTCGACGAGGTCAGGAGGGTAGGAGGAGAG 281638 33 100.0 36 ................................. TCCCTCTCCGATATTTGCGTCAATGGAATCGCTTTC 281569 33 100.0 33 ................................. GCTAGTCCATCTCGTATAAGCCCCAGTACTGCT 281503 33 100.0 34 ................................. CATCCCATACTTTAGTACGATACCAGCCATCATC 281436 33 100.0 33 ................................. GATTATACAGCCAAGGATAGACAACTTTTCTGA 281370 33 100.0 34 ................................. ATCAATAAGATTGGATTTGATGATGTCATCACGC 281303 33 100.0 35 ................................. CTATAACACCTATCGTGATTATGAATCTAAGATCA 281235 33 100.0 33 ................................. GATTATACAGCCAAGGATAGACAACTTTTCTGA 281169 33 100.0 35 ................................. TGAAATTATGCATATGATCCAGCAGTTGGAAGGAA 281101 33 100.0 34 ................................. CAATGCTGGAGAACACGGTTCCGAATACTATAAG 281034 33 100.0 33 ................................. TTGATGGACAAAACATGATAACCAATCGTAACA 280968 33 100.0 33 ................................. ACATGGCTGCGGAAAGAGCGGTTCGTTCCGGGC 280902 33 100.0 34 ................................. TCTCTATTAGTTTGTCGCTCTTCTGCCTGTTGCA 280835 33 100.0 35 ................................. CTGGGCGTTGCACTCTTTCTGAAGGCGCGCGCACC 280767 33 100.0 33 ................................. TGCTTATGACGGAGCAACCTCTGCATATCAGAA 280701 33 97.0 36 ..............A.................. TGCAAGCATATTGTCTTTGATATAAGACGCATACTC 280632 33 93.9 34 ..T...........A.................. ATCGGATACCAGACCTTTACGGAAACAAAAAGTT 280565 33 87.9 34 ......T.......A.......C.A........ GTGTAGGTTCCGGAGATCGCGCAGGTATAGTACG 280498 32 78.8 35 .......T...T....A..TA-..A........ CCCTTATCTCAGACAGCCGTTTCACGCCAGATCCA 280431 33 81.8 0 ......T....T...A.A.....A.G....... | T [280424] ========== ====== ====== ====== ================================= ==================================== ================== 23 33 97.4 34 GTCGTTCCCTGCATTGGGAACGTGGATTGAAAT # Left flank : ACAAGTTAGGCCTTAACTATGTATCTTGCTCACCATTCCGCGTGCCGATCGCAAGACTGGCTGCAGCACAGGCTGCAATCGCAGAAAAGAATGCATAATTAAATCACAAGATATTTTGACGCAGGGGCAGTATGCCTCTGCGTCTTTTCGATATTGAGGAAAATATATTTTAATAAAGTTCAGCAAGAATAGCAGTCAGCAACGTAATGTACTTAAGAAAATTCGCAATCGAAGCCATTCTTGAAGCCTTAGATATTAGAAAGGCTTATCAACGTCTCGGAAAATATAAAAAGTAGTAGAGAAGATTGAAAGTTAGACAGCAATTTGGTAGTGCGAATATGAAGTATACATAAAAATCCCAGGAGATTCGCACCAAAAAAGTTGCACAAAAATTGAGTATTGTATTACAATATAGATTAAAGAGGAAAAGATATTAAAAGAAAACCGTAATATGTTACAAATATAGTGTTGTTTAAGATTGATATTTGGATATGTTTGCT # Right flank : GATCAATGTCCGAATATGCCGTTTAGTTAAAACGTGGTATTCCCAATATCAGGAGGATGTCACTAATAATCTACTAATGAAATACAGGAGGTATAATATGATAGCATTTTTGACAAGTAGCCCTGGTGGCTTTCGATTTGAAGAAGGAAGTATTTTGCCTTGTCGCCTGGATGAGAGAAATGGTTTCATAGATAATTTGAAACGTTATTGGAAAGAAAGGTCCAAGTGTCTTCTTATTTGCGCATCTCCCATTGATTTCGAGGAAAATGATAATATGAGGAATATTATTATGGAAGCATTTGCGCTAAGTGGGCTGGAAATGTTAGTATGTGATATCTGTGATGGCAGAGTCAGCGATTTTTCCGAGAAGCGATTGGAAAAATATGACGTACTTATATTAGGCGGAGGGCATGTTCCGACCCAGAATCGATTTATGAAACAGATAGGACTAAGGGAAAAGATAAAGGACTTTGCAGGTATTATCATTGGTATCAGTGCAG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTGCATTGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //