Array 1 9568-9720 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLQ01000042.1 Streptomyces albidoflavus strain DSM 40233 Scaffold19_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 9568 24 100.0 41 ........................ TCTTGAACGGACGAGTCTGATCCGGACCTCGGCCCAAAACC 9633 24 100.0 40 ........................ TCCTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAGAT 9697 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================= ================== 3 24 100.0 41 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : GCGACCTCCTCGACGGTGTACTCCCAGGGCCGCAGGGCATCCAGCGCCGCCGGAGCGGGCGGCGCACCCCTGGGCCCCCGCACCAGCCACTCGTTCCACAACGCACCCCCGGGCGCCACCACCGCCTCGAACCGCAACGCGGGCCAGAGCACCACCGGCCACCGCAACGCCTCACACTCCAGATCCCCCACGACCCGCCGCTCCACGGCCTCCGGCACCCCCAGCACCGACCGCAACAACCCGGCCCCCCGCCGCCCCCTGGGTGACCGCACCATCGCCTGCCACCGCCGGTTCGCCTCCCGCATCGCACCGGCGTCCACCCCCAGCTCCCGCCGCGCCTCCTCCACCATCTCCGCCTGAAAATCAGCCATCCGCCGCAACAACACCAACTGAAACTCAAGCGACCCGAACGAACTGGTCCCACCGGCAGCAGCGCACATCCCCCCATTGTCCGCAGCCCCCGCCCCACCGCGAAAAACAGCGGGCACGACCGCCGAAAA # Right flank : ACCCCACCGCACCCCCTGCCGGGGAGGGAAACCTCACTCCCCGGCCATCCTCCGCAACATCCCCCGGAGGACCTCCCGCTCCTCCCGGGAGAACCCGGCAAGCGGCTCCCGGGCAAAATCAAGGGAGTCCCGCAGCACCCGCGCGACCTCAAGCCCCTCCGCGGTCAGAGCGGCCACCTTGATCCGCCGGTCCCCGGGATCGGCCTGCCGCTCGACCAGCCCCCGCAGGGCGAGCCGGTCCACGATCCCGGTGACGTTCGACGGCTCGCACTTGAGCCGCCGGGCGATCTGCCGCATGGGCATCGCCTCGAGGGACAGCAGACCCAGTACACGCGCCTGCGCGCCGGTGAGTGCCTGCTCGGCGGCGGCCCGGTCGTACTCCTCGTGGTACCGCGCCACGACAGCGCCGATCAGCTCGACGACTTCGAGGGTCAAGGGGTCCGTGCGGGTGGCCATGGGTCCCAGGATAGCCGGTTGCTTGACAACATGAAATATTCAGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 30963-30753 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLQ01000008.1 Streptomyces albidoflavus strain DSM 40233 Scaffold26_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30962 28 96.4 33 ........................C... CCTCCTCAGCCTCTACAACAGCACAGCCGGTGC 30901 28 100.0 33 ............................ CGGCGAGCGGCTGCTCGACGACCCCGGGTGGGT 30840 28 96.4 33 ...C........................ CATGAGGACGGGCATCCCGTGCGCCTCGGCCAT 30779 27 78.6 0 ...C.......GA.........C.-.G. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.8 33 CTGTTCCCCGCACGTGCGGGGGTGGACC # Left flank : TGGCCGAGCGGTCCTGGTCCGGTGTCGAACCGGAGCCGGGCACGGCCCCCTTCGTCCTACCGCACGGAGAAGCGCGGTTCGTCAACGCGGGGATCGTCCCGTGGCTAGACACCCATCAGCACCCTTCACCGCTACGGCAGCCACGTCACCACCTCGGCGAGCCTGACGGCCCTGAGGGGGACCTCTGCCCGGTCGAGGAAGAGCAAGGTGTTCTTCTCGACTTTGCTTCGGGGTTGGCTGGGCAGCTCACCTGTACGGAGACGGGTCGCGCAGACTGCGACCGAGACCATCCCCAGCACCCAAGGGGGTGCAAAGGCTCCGGCCGTGGCGCCGGGGTTCGCGCTCCTGCCTGCCGACGACTGGGATGGGCATGCGTGCAGTGCTCGGCGGGAAACCCCGTTAGCAGGGGAGGGATTCGGACGGCGGAGGCTAGGGTGGCGGACATGGCGAAGTTGGCGTGGAACGGCGACCTGCCGAGGTGAAGATGCAGGTCAGGAAGA # Right flank : CTCCCGGGCTCCAGTGCACTGGCTATGAGGAGCCCGCGCCCTTGAGCCCCGCAGAGCCACGGTCGTATCCCCGCCATGAGACGGAGCCACGCCCTCGACCGACCTACGCATCGACCGCGTACGAAGAGGCGAACTGGGCGCCACCGGAGAGGACTTCTGCAAAACGTGTCGGGAGCCTTCACCCCACAGCGCCCCTGCTCACCGCCGGTATGCCTAGGTGCACGACGTGGCCCGCCGAACCAATCACGTCGCACGAGCCCGTCAGGCTGTCCTCGGCCCCCCGCGCGCCCCAGTCAGAAGGGCCCACCCTCCGCTAGCCCCGCCCCGCCTCCCCGGCAAGCGGTCACGCAACCCCCGCAAACGCCTCTGCCACGTGCTCGCGGCAGGCAGCACCCCCGCACCCGGAAGCTCCCCTGCCCGGTCCTGCCAAGCCGGGAGCATGCCCCCGAGGCGAGCCCAGGCAAGCCCAGGCGAGGCCCACCGGCCGCCCCTCTCGCCCC # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACGTGCGGGGGTGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 270389-270176 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLQ01000039.1 Streptomyces albidoflavus strain DSM 40233 Scaffold3_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 270388 30 96.7 31 .............................C TCCCGCACCGGCGGGTGTGGCTGGTCGGCGA 270327 30 100.0 31 .............................. ACCTCGTCCTCGACGAGCTGTGGCGCGTCCT 270266 30 90.0 31 ...........A...........A.....G AGGCCACTCCGGTCGTCACGAACATCATCGA 270205 30 76.7 0 ..............G......CAA.C.T.A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 90.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : TGGGCAAGCCCACACCGCGCCCCCGCTACGCCACCGGCAAAGTCCGATACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCTGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTAGGTCGTGTCCTTCCAGAGCCGGCCGTGGATGTCCGTGTGGCAGGCCCGGTCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGGCGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCGAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGATGCGCGGGGGACCGGGGTCTGCTCCGCCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGGACTCAAGGCGAGGTGGGCATTGGGGCGAATGTCGCTATCGGTGAAGCGTTCAGAAACTGGGGCAGGGGTGCCGTAAGGCCGCTGGTCAGGGAGA # Right flank : CCCCGCCTCACCCCGACCCGGCGCCCAGCGCCGCCACAGGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCCGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGCGGGAGTGCGCGCGGGCTGGCGAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCACGGTGGACGCCGACGACGACCACGCGTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGCA # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 159072-159222 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLQ01000043.1 Streptomyces albidoflavus strain DSM 40233 Scaffold4_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 159072 29 96.6 32 ..............C.............. GAGGGGTACGCCATCACCGGGCGGCCGCCGGC 159133 29 100.0 32 ............................. CGGGCCAGGTGGGCGATGGCCTGCTCGACGTC 159194 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : GGTCGTGACCGACCGGATGAGCGCCCCGTACCTCGGCGGCGCCTCCATCGACTTCGTCGACACCATCGAGAAGCAGGGGTTCACCATCGACAACCCCAACGCCACGGGCTCCTGCGCCTGCGGTGACTCCTTCAGCTGAGTCGCTTCGCCGAGAGGCGGTGCCCCACTTCGGTGGGGCACCGCTTTTTTGCTGGCCGGGCCTCACTTGCCGGCCGGGCTGGTTTGGCCTCAAGCGCCGGCCGGGCTGATGGGGGTCGTGTTCGGGGCGCGGGCCGTCGGCCTGTGCGGTCACAGATGGCCTCAATCGCCGGCCGGGCTTGAGTTTGGCTGGGCTTGGACGGTGGCCTCAACTGCCGGTGCTGCTGGGGGGCTGGGAGAGGATGGGCGGGGCTTCGGGCGCGACAGGGGAGGGTGTTTGCCGACTTTCAACCCAATTGCGGCATTCTCGCAAGCTTGCAGAAATAGGCTGAACTGCTAGGCAAAGCCGCAGGTCATCGAGG # Right flank : CCGTTCGAGGAGATCCGCTGTGGCCATCGTGTGGTGCTCCCCGCGTACGCAGGGGCCCCCGGAACCCAGGTCTCCCACCTGCTCAGTGCCACCGCTGGGCGCACCAGACGCCCCCAGCCCAGCGCCCCCCTCCCCTCAGAACGCCAAGATCGTGACCGTAGCCGCGTAGATCACGACCAACAGCGCCCCGTCGAAGCCCAGGCGGAACCAGCCGCGTTCCTGGCGGATGAGGAGGCCGCCGAGGACGACGGTGGTCATGACCAGGGCGGCGCTGGTGAGGAAGAGTTCGTCGTTGCCGGCGGCGTGGTAGAGGGAGCCGCCGCGGTAGGCGAAGTCGCCGACGGCCAGGTTGAGGACGTCGAGGGAGTTGCCGCCGATGATGGCGGCGAAGGCGAGGGTGATGGCGCCGCGGCGGACGGCGGCGATCGAGGTGACCGCTTCCGGGAGGCCGTTGATGACGCCCAGGATCACCGCGCCGACGAAGCCCGCGCGCAGGGTGG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //