Array 1 358-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPL010000312.1 Nocardia sp. ncl1 NODE_315_length_393_cov_0.932331, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 357 28 100.0 33 ............................ CTGTCGGATCGCGCGCACTTTCCATGCTCCGAC 296 28 100.0 33 ............................ TCGTGCTCCACCGTGATAAGCGGGCGCTCGGGG 235 28 100.0 32 ............................ ATAAAGGCCCCGAGGTAGTAGAAGGTGCGCAT 175 28 96.4 33 ..G......................... GGGACGCATCGCAAGCGCGCCAGGAGCGTGCGG 114 28 96.4 33 ....C....................... ACGACCTGCCCGAGCGGGTTGGTGGCCGGCGCG 53 28 96.4 0 ............T............... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.2 33 GGCCTATCCCCGCGCATGCGGGGGAACC # Left flank : ACCTTCCCGAGGTGGTCAGCGCTCGCGCGCCGGTC # Right flank : CGTGGCGATTTCGGACTCGCCAGCCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCTATCCCCGCGCATGCGGGGGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [15.0-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1390-1055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPL010000168.1 Nocardia sp. ncl1 NODE_168_length_10031_cov_15.4462, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1389 30 90.0 31 ....C.......C................G GTCCGAGCGCGGCCGGGATCTGCGGCGGGAT 1328 30 86.7 31 ....C.......C.............A..T GTCCTCGTGCCGGGTCGAACCGCACAGTTCC 1267 30 90.0 31 ..T.C.......C................. CGTCGGACCACTATGTGAGTACGGTGAGCGG 1206 30 100.0 31 .............................. TTCGGATGGGTGTGGTCTGAGTACCAACCTG 1145 30 80.0 31 ...T........C.T........TA....A GGGAGCCTTGTCTTTCGGCACCGTCGGCCGG 1084 30 76.7 0 ...T.............A.AA....G.GA. | ========== ====== ====== ====== ============================== =============================== ================== 6 30 87.2 31 GTCCTTCCCGCGTACGCGGGGGTCGTCCCC # Left flank : CTGGGTCAAACAATTCGACCACCGCCCCACGACCGAACGCGCTACCGGTGACCGCGTCGAGTTCACCGTCGAACTCGCCGCCCTGCGCACCCCACGCGTCCACGTCGACCCCGCCATACACGCCCTACTCAAAGCCGGAGCCGACGGCACACCACGCCCGCCCGGGCAAGGGAAAGCTTACCGAGCCAACAAAATCCCCGTGCCCCGCGACGAACTCCACGACTGGGTGGCCACCAAACTCACCCGACATGGCCTGCACCCCGAACACATCGACATCCACTGGTACCGCACCATCCGGCTACCAGCCCACCGCGACTCCCTGCCCATCACCCGAATCCACACCACCGCAACCATCACCGACGCCACCACCTACAACCACACCAAACAACACGCCCACAACATCGGCAAAGGAAAATCCTACGGAACGGGACTCATAACCGAACACAACGAAACCGAATGAAAAACGACCCGACCGCCGACATCCACGCAGGTCAAGAAGT # Right flank : GGGCGCGGTGTCCGGGCTGACTGGTTGGCGCCCCTTCGCTCGCTTGGGATCCGCCAGGATGAGTCCAGGGATCGAGTTAACCCACAGCGGTTGTTGTGCGCTGGCACGGCGCAATCGGGCGTGGTCGCTATTGGCGTGACGGCCTGCGATAGCCGCAGCGCTCGATGATCTTCGGCGAACCTTCGTATGGGGGTTGTACAAACAACCTGGCGCTGAACTATGCTCGCCTCGTCTGAATTTGAGGTGTCGAACCACGAAGACCAACCCTGTCGGTCGCGGCGTGATCCCTCCCGATTTCCAGCTGGGATCGAGAGGGGCCCTGATCCCGGCTGCCCCAGGCGGAAGTCGGCCACTCCGCGAACGGAGTGGCCGCAGAGCGGGAGGATATTCGTGGAGGACTCCCACGATTCGGACAGCCGGACCCCTTGGTGGATTCGCTGGAAGAACGCAGTCGTCGATGCTGGTCAGGTCGGTTCGTTCGCACTGACTGTCGTCGGATG # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.36, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTTCCCGCGTACGCGGGGGTCGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9866-9227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMPL010000168.1 Nocardia sp. ncl1 NODE_168_length_10031_cov_15.4462, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9865 29 100.0 32 ............................. CAAGTTCGGTCTGTCGGGAATCTCTTCGAATT 9804 29 100.0 32 ............................. CTGCGCGAGCTGCGCGACACCTGGATCCCGGC 9743 29 100.0 32 ............................. ACCCGAACCAGTCAAAGCCGGGACCTGCGCTA 9682 29 100.0 32 ............................. GGCCCCATCACCTGGTAGGCGGATTGGGCGCC 9621 29 100.0 32 ............................. TACGCGCTCCGATGCGCCTGCTGGGGCAGGCA G [9605] 9559 29 100.0 32 ............................. ATGTACACGGGCCGCTGGTGGGTCATTGTGGG G,C [9542,9550] 9496 29 96.6 32 .C........................... AAGGGCTTCGTCGCCTACGCGCCAATGAGCGT 9435 29 82.8 31 ...T..A.......G.........A...G GACGCTGACGATGCGTTCAACAAAATGGTCG 9375 28 75.9 32 .GTT..T.......T.........A-... ACCACCGCGTATCGACCATTGCTTTCGGTACC 9315 28 89.7 32 .............GA......-....... GCGCGCTACACCGCCCCCGCCATTGCGACGCA 9255 29 82.8 0 A...G............A.....T....G | ========== ====== ====== ====== ============================= ================================ ================== 11 29 93.4 32 GTCCCTCCCGCGCACGCGGGGGTCGTCCC # Left flank : AGGACCGCGACCTCGGCCGCGTCCCCACCGCCGGCACAACTGAAGACTGAAACCATCAACCCGACCGACCAAAAGGGGGTCAGAATTCCGGTGCCGAGAAGTGTCCAGGATTGGCGTTCCGTTGACAAACTGCCCATTCTGCCGATATCCATGCAGGTCAAGAAG # Right flank : ATTGCGATGGTCGGCATCGACGACGATGTTTCGGTGTTGTGTCGGTAGGCGGTTGTACTGTGCCGACGTATCTGTCGGATTGCCGGTGCCGCGCATCCATATTCGCCGACTGGCGCATTGCGTTGACTTCTGTGGACGGAAAGCGCACGAAACGACCCGTCACCAACACAACGAAACTAAATGAAAACTGCCCATTCTACGGACATCCATGCAGGTCAAGAAAGTCCCTCCCGCGCACGCGGGGGCCATCCGTCGGGCCCGTTGGCGCCGATCGCCTTGCCGTTGTCCCTCCCGCGCACAGCGGGGGTCGTCCGATCTCTTCTCCGTCCGAGGCCGTGCGAACCTGGTCCCTCCCGCGCACGCGGGAGTCATCCCGCGGGCATCGAGATCGTCATGAAGAATGCCCCGTCCCTCCCGCGCACGCGGGGGTCGTCCCGGCAAGAACGGCGGGCTTGAGGTCGTCGAACTGTCTCTCCTGCGTACGCGGGAGTCGTCCCAAC # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCTCCCGCGCACGCGGGGGTCGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [20-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //