Array 1 1162011-1161578 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP044412.1 Lactobacillus sp. JM1 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1162010	    36	 100.0	    30	....................................	CCTCTGCTAAAGTATATGTTTAGTTCTGAT	
   1161944	    36	 100.0	    30	....................................	GGTTGGAAAGCACTATTCCAAGATAAAGCA	
   1161878	    36	 100.0	    30	....................................	TATCGCATTATTCATCGTATCCATACCCGT	
   1161812	    36	 100.0	    30	....................................	TATCGTCGGTACGAGTTGTAATGCTGAATA	
   1161746	    36	 100.0	    30	....................................	TTTGCATAATTAATGAAATCAGCGACAACA	
   1161680	    36	  97.2	    30	............................T.......	AGTTAATCAAAGAAGGCGGACAAAAAGGCG	
   1161614	    35	  91.7	     0	..........................A.T....-..	|                             	TA [1161584]
==========	======	======	======	====================================	==============================	==================
         7	    36	  98.4	    30	GTTTTAGATGGTTGTTAGATCAATAAGGCTTAGATC	                              	       

# Left flank :   AATCAAAATATTTTTGACAAGTATATGCCCGTAATTATAAAAGAATACATTGAAGTGCTTAATGAAGCAGATCGTAATGAAATATTAAAAACGTACCATAAACTAGAAGGGATAATTCAAGATTCGTTGCTACTTGAAGATCTACCATTAGAACTTGAATTTAATGAAGACTTGAAGAAATTTTTAAAGTTAGAAAATCTACATTTAGATACTAAGTTTTTAGAAGAACCATATGCTATAATTGAATCGATCTTAAAAATACATCAAAATTATAATCTCCATTCTATACCTGTTGCTTGTAATGTAGCTCATTACTTAAATTTAGCTCAGGTAGGGATGTTAAATGATCTGTTAAAAGAAATGAAGTTGAAATTAATTTTAATAGAATTCACATCTGCGGATTTTCTGTTTTTTCCAAAAGATGTTGATTATTTCTACATTGATCAAGATCTTGTTGATTGGTACTAACTATCTGATTAAAAACTGATTATAAAATTTCG
# Right flank :  GTAATTACACTACTGGTTCATTGCTTTTGCAATGTGCCTTTTTTATTATCTTCCAAACCGTTTTTCACCCTACAGTGCAAAAGTCTATTTTAAATGTAAGTGCCTATTTTATACCATATAAGTGTCAAGAAAAATAATATTAATGGATAATTTAAAAATGACTAAGAATGTTTTTTTGGTATGTGGTTCAGGTGCAGCATCAGATTTTATGGCTGCTCACATGAGAAAAACATCAAAGAAAGTTGGTTTAGATTATAAAATTCAAGTTCGCAGCGAAGCAGAATTAGGTGACTATGCAGATCAAATTGCTGCCTTAATGTTGGGTTTCTTACTTAAAGACGGAGTTTGGTGCGATTAAATTACAAGTACTTGACAAGGTAAAGTAATTTTAATGAAACTAGATTACTATTCAATTTCCATTTAATTTTATGGATTACATGAAATTAGACAAGCAAAGAATCATCGCGGATCTTTTCCTCAGGGCGCGGTATGTTTATTTT

# Questionable array : NO	 Score: 6.18
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGATGGTTGTTAGATCAATAAGGCTTAGATC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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