Array 1 566396-566162 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXN01000023.1 Streptococcus uberis strain OLC4459-A12 k127_178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 566395 36 100.0 30 .................................... ATAGATTTGCTAAGTTAAATAAGGTACTGA 566329 36 100.0 30 .................................... ATCGGAAACAATTGTGCATCTCTGACTTGG 566263 36 100.0 30 .................................... ACATTACCTAAGCCAGCGAATCCACCTCTT 566197 36 94.4 0 ..................................TT | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 98.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : | # Right flank : AGTATTCTTAAGTAGGTTTGGTAACTGTTGATTTTTAAATAATTCCATATAACACCAAGAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTACTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGAGTTTATCCAATCTATTGTTTAAAATGTATAATTATTAATAAAATAGCTTTAAAAATGTATATCGAGAAATACGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAAGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCAT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 319484-320245 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXN01000020.1 Streptococcus uberis strain OLC4459-A12 k127_166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 319484 36 100.0 30 .................................... TATTCCTCAAGTATGTACAGCTTACGATTT 319550 36 100.0 30 .................................... GACCTGTTACCGTTATTAATAAAATATTGT 319616 36 100.0 30 .................................... TTATGGCTGGAAAGTTATGACTAATGATCC 319682 36 100.0 30 .................................... GCTTCTAAATAAGTCATAGGTACATCTATT 319748 36 100.0 30 .................................... TTTTAACAAGTAAAAGATTTGACCCTGATG 319814 36 100.0 30 .................................... AAATCCACTGTATAACGTAATCAGGCCTAT 319880 36 100.0 30 .................................... TTTTGATTTAATGATCATCGATGAGGCGCA 319946 36 100.0 30 .................................... TGAATTACTTTGGTTAGTGAATCAAGTAAA 320012 36 100.0 30 .................................... TCTATAAGTGGCTGGAAAGCATGGGTAATG 320078 36 100.0 30 .................................... GATGATCTAATCGCAAATAAAATTTCTCTT 320144 36 100.0 30 .................................... ATAGATTTGCTAAGTTAAATAAGGTACTGA 320210 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATGGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTAATTTGAG # Right flank : ATCGGAAACAATTGTGCATCTCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 51-745 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLXN01000012.1 Streptococcus uberis strain OLC4459-A12 k127_120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 51 36 100.0 30 .................................... AACACGCATTTGATTAATATCAAGACCAGC 117 36 100.0 30 .................................... TCTTTCCTTCTTTAGTTTTTCTATTGCTCG 183 36 100.0 30 .................................... ACAGGGACATTTGTACCATATAGATCTATT 249 36 100.0 30 .................................... ATGCTCCTGTAATTGCTTCAGTGATTAGAT 315 36 100.0 30 .................................... TTGCATCAAGCAGAAAAAGAAATTGGTTCT 381 36 100.0 30 .................................... CTCTGTTCATAAGACCCCTCAATTTATGGT 447 36 100.0 30 .................................... AAAAACGATTGAATGGCACAAAGACGAGGA 513 36 100.0 30 .................................... AGTTGAGTACAGGTTTAAGCTCTGGTTTCA 579 36 100.0 29 .................................... ATCGAACACTAATAAATACTAACTAACAA 644 36 100.0 30 .................................... ATAGATTTGCTAAGTTAAATAAGGTACTGA 710 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : GATTTAAGTAACTATAAAACATTTCTGTGCTTTCGACATCTATTTGACCGG # Right flank : ATCGGAAACAATTGTGCATCTCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //