Array 1 3208-587 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLT01000019.1 Streptomyces albidoflavus strain FXJ8.011 Scaffold17_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 3207 28 100.0 33 ............................ GGTCGGTCTGGCGAAGGCGAAGATCGGCAAGAC 3146 28 100.0 33 ............................ CCGGTCCGTACCGACGTCGCAGACGTACGCGTA 3085 28 100.0 33 ............................ GATGCCCGCACTCGCAGCGCTCATGATCGCGCT 3024 28 100.0 33 ............................ GCCGGTCTCCGCGGTGGACCCACCGGACCACCG 2963 28 100.0 33 ............................ GGTACGTGATGCACCTTGCCGCAGCCATGAAGG 2902 28 100.0 33 ............................ GGCCGAGGCCGGGAGGTCGACCGAGCCGCCGTG 2841 28 100.0 33 ............................ GCTCCTCGACCAGGGCGCCCCGCCGCTCAAGGT 2780 28 100.0 33 ............................ GCGCGATGAGATGTACGAGCGTCTCGCAGCGAT 2719 28 100.0 32 ............................ TGGCGTCGAGGCGCGTCATCTCCGCCGCCGTG 2659 28 100.0 33 ............................ CGCCCGCCGTCCCGCAGCAGATCACCACAGCGA 2598 28 100.0 41 ............................ GGTCAGCGGGTCAGCGGGTCAGCGGGTCACGTAGCGGACCT 2529 28 100.0 33 ............................ GCGGTGTACGCCGCCGCCCTGGTCACCGAGGCC 2468 28 100.0 33 ............................ GCCGTACTTCGTGGCCAGCGCTCCGACGACGTA 2407 28 100.0 33 ............................ GCACCGCGCCGTGCGGGACTGGCTGGGCTGGCA 2346 28 100.0 33 ............................ CAGCGCGAACGTCACCTTCGCCGCCGACGGCCC 2285 28 100.0 33 ............................ CTGCTGGCCGATGGCGGTGGTGGGGGAGAGCGC 2224 28 100.0 33 ............................ GCACGGCCCCCGGCAGCCGAGCGTGTCGTGGTC 2163 28 100.0 33 ............................ CCGCTCGTTCTGGTGGACCTTCACGTACCAGGT 2102 28 100.0 33 ............................ CGGCGGGTCAGCGATAGCCATGCGCGCGGTCCT 2041 28 100.0 33 ............................ GCCCGGCCACGTCGACTGGTGCGGTGAGTGCGA 1980 28 100.0 33 ............................ GACCTCGACGTCCGCGACGTACCCGGCCGGGAA 1919 28 100.0 33 ............................ CGCCAGGTCGACCACCAGCGGGAGGACCCACGC 1858 28 100.0 33 ............................ CTGGCCCAGCGTGTTCGCGCCCGGCCCGGCCGC 1797 28 100.0 33 ............................ GCCCTGCCGCCCGACCGGAGGGACCCCACGCTC 1736 28 96.4 33 .......T.................... CGGGGGCACGTCGACGTCGCGGGTCAACCCGTC 1675 28 100.0 33 ............................ CACGAACGGGGCCCAGGCGGTCGCCCAGTCGGT 1614 28 96.4 33 ..........................T. GGTGGTACCACCGTGCGGGTGGCATGGGTGATC 1553 28 96.4 33 ..........................T. GTCCAGACATGCAGACCATGTACGTGCGCTTGG 1492 28 96.4 33 ..........................T. GATGCTCGCGGCCCGGATGCCGGGGCCCTCCAT 1431 28 100.0 33 ............................ GTACGCCGCCCTCCTCTACGGCACCTTCGAGCG 1370 28 96.4 33 ...........G................ CCTGGCCGGCCAGGGCGCCCGCGCCACGATGCT 1309 28 96.4 33 ......G..................... CGGCCAGCGGCCGGAGGGGAGTGGGGGGTGAGC 1248 28 100.0 33 ............................ AGGCATTGCCCAGTTCATTGACGCCACGTGGGC 1187 28 100.0 33 ............................ GGACCGCGCCGCACCGATGCTCCAGGGCAGCTA 1126 28 100.0 33 ............................ GGGCATTGCCCAGTTCGGGGACGCCACGTGGGC 1065 28 96.4 33 .....................C...... GGACCGCGCCGCACCGATGCTCCACGGCAGCTA 1004 28 96.4 33 .....................C...... CACGGCGGCGGTGCAGGCGACGACGACCAGGGG 943 28 100.0 33 ............................ CCCGCCCGAGTGCAACACCCTCAGTGACGAGGA 882 28 100.0 33 ............................ GCCCTCGCCGCCCGGCCCGTCGTGGTCGTCGCC 821 28 100.0 33 ............................ CGCTCCTCGGCGCGGCCGCAAGCACCGCGACCG 760 28 96.4 33 .......G.................... GTCGAGCGGCACCTCCGCCGTGGCAGGTGCTGG 699 28 100.0 57 ............................ CCAGCGGCGGGCGGCGAAGAAGGCCAGCCGCAGGTGCCGGAACTTGATCTCCCAGGG 614 28 85.7 0 ....................C.A..G.T | ========== ====== ====== ====== ============================ ========================================================= ================== 43 28 98.9 34 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CTGGAATGCAGGCGTTGCCTTACCAAGATCGTGAACAGCGCATAGCCACGCAAACAACCTGCGGCCCCGACCCGGACCACCGGACACCTCATCCAGCAGGCCACGCGTCGAAGGGGCAAGGAAGCTGTCCCACAGCCGCTCAGCCACAGCCGCCGTATCAAGCAGGTGCGACAGAAGAAGATTCGTCTGCCCGCCGGCACGCTCCGCCGACTTCCCCCACAAAACCCCTAACGGACCTTCCACCGACTCCAGCGGCACCCCTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACAACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCTACGGCAGGCGCCCGCTCTACGCGGTCACGCACGCCGCGCTCCCTGCCACTCGCTGCCCGGCCCATGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGCTAACCTCCCTGGTCAGCAAGT # Right flank : GCAACAGGGCTCTGGGTGGGTATGCAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTTAACTGATCGTTTCAGAATGAGGTTCGCAGGCGGCGGAGGCATATGAGGCTGCAGGCCAGTTCGAGCAGGCCCTGGTGGAGATCGGCGCGTCGCTCGTAGCGGATGCGGAGCCGTTTGAACTGGTGCAGCCAGGCGAAGGCGCGCTCGACCACCCAGCGCACCTTGCCCAGTCCTGAGCCGTGGGCGACACCGCGTCGGGCGATCACCGGTTTAACGCCGCGCTTCCACAGCAGGCGGCGGTACTTGTCGAAGTCGTAGCCCCGGTCGGCATACAGACGCCGGGGTTTTCGGCGGGGGCGTCCTCGCAGACCCCGGATCGGTGGGACCGCGTCCAGCAGAGGCAGAAGCCGGGTGACGTCGTGGCGGTTGCCGCCGGTGAGTGTGACGGCCAGCGGAGTTCCGTGGCGGTCGACGATCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13380-15687 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLT01000019.1 Streptomyces albidoflavus strain FXJ8.011 Scaffold17_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================== ================== 13380 28 75.0 114 .G......GT..A..A.....C..A... TCTCCGCTCGAAGGCCAGCACATACGCAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCA AA [13398] 13524 28 100.0 34 ............................ TCCGGATGGACAGGACCTGCTCTCGGCACGCGGG 13586 28 100.0 33 ............................ CGCCTTCTGCGTGGCCTTCGCGTCGAGGCCTGC 13647 28 100.0 33 ............................ GCTGCCCGTCGCGCTGACGGTGCCTGCCGCCGA 13708 28 100.0 33 ............................ CTACCGGGTCATCGGGCAGCAGGCACGCCGGTC 13769 28 100.0 33 ............................ CCTTCCGCCGGCAACCTCCGGGCGAGGCGCATC 13830 28 100.0 33 ............................ GTACATCTCCAAGGTGCAGGGCACCGACGTGGC 13891 28 100.0 33 ............................ CACCGGCCCCGGAATGTGCTGAGGTGATCTCAG 13952 28 100.0 33 ............................ GCGCACGCCACCCTGGCGCTCGCCGCCGCAACA 14013 28 100.0 33 ............................ CACCGGCCCCGGAATGTGCTGAGGTGATCTCAG 14074 28 100.0 33 ............................ CTTGGGGTGATCGGGCGTCCGACTGCCCAAAAG 14135 28 100.0 33 ............................ CCGGCCTCCCACCTGCGGATACAGCAGGAGGGA 14196 28 100.0 33 ............................ CGGCAGCAAGGGCCGGCTGCGGCGGGGTGAGCG 14257 28 100.0 33 ............................ CGCGGCGGCGAGGGCGTTGTAGGACATGGGCGG 14318 28 100.0 33 ............................ GGGCACCACCACACTGCGCGCCATCCTCGGCAT 14379 28 100.0 33 ............................ GCCGTCGGTGTCCAGCTCGTACGTGGGGAGCCT 14440 28 100.0 33 ............................ CGTGCACGCGTTCGTCCGGCTCACCTGGTGGCA 14501 28 100.0 33 ............................ GCCCGCCTCCGGGCCTCCCACGCTCTCCCTGGC 14562 28 100.0 33 ............................ GCTGGCTTCAGGCGCCCTCGTTGGGGCGGCTGG 14623 28 100.0 33 ............................ CTGGCCGGGTGTGGTGCGGTGATGGGGGATGGG 14684 28 100.0 33 ............................ GTACGCCGGGCTGTCCTCGGTGTCCATCTGGGG 14745 28 100.0 33 ............................ CGCGGAGAACATGGGCTGCACCCGCACCATGAA 14806 28 100.0 33 ............................ GGGCTGGGACCGTAAGGATTCCCGCCTCGCGGA 14867 28 100.0 33 ............................ GGCCGAGCACATCCCGCCCCTCTCCCCGAGCGG 14928 28 100.0 33 ............................ CGGGGGAGAGGTGGACGGGCATATGCCGCTCGT 14989 28 100.0 33 ............................ CTGTGCGGACAGCACGTCCAGCTCCTCGCCCGC 15050 28 100.0 33 ............................ CTGCCGCACATCCGGACACTGGTCGCCGAGGGC 15111 28 96.4 33 ..............C............. CTCTTGACGCCCGGCTTGGCGGGGCCGGCCAGT 15172 28 96.4 33 ......................C..... GAAGGGAAAGAAGTTTCCCGACCCTGACCCCAA 15233 28 100.0 34 ............................ GGCCACGTAGGCGGCCCTCGGCGCGGGCGTCGGC 15295 28 100.0 34 ............................ GGACCTGGTGCCCGACCTCGTCTCGGCCCTGGAG 15357 28 96.4 33 ......................C..... CAGCCACTACAACTACCGGGACACCGCCGCCTT 15418 28 92.9 33 ...................A...G.... TCTTCGCGGGAAACGGGTGCGGGCGAACTGCCC 15479 28 100.0 33 ............................ GGCGCGGCCCACCTGGTCGCGCGTCACTCGGTC 15540 28 92.9 33 ......................CG.... GAGGTCATCCGCGACGGCGGCCGGACGTTCGCC 15601 27 85.7 32 .....T.T........-......G.... GCGCGCCACGCAGGACCACTGGCGCACCTGTT 15660 28 92.9 0 ..............C........G.... | ========== ====== ====== ====== ============================ ================================================================================================================== ================== 37 28 98.1 35 GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Left flank : ACCGCATCGCCGACACCAAACTCCTCTCACGCATCGTCACCGACGTTAAAGCCCTCCTCAATCCCCCCGGTACCGACTTCGACACGCCAGAGACGAGCGCTCTCTGGGACGAGCACGTCGGCACAGTCGCCGCAGGCACCAACTGGTCCGCACAAGACACTCATCCGGCCACCCGCTCACACCATGACCTCTCGCCAGCTGCGCTCGGGGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACCGTCATCATCCTGATCGCGGCTCCAGAAGGCCTGCGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCTGGAGTCTTCGTCGGCAACCCCAGCCGGCGAATCCGCGACCGTCTCTGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCGCCGCCAATGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCT # Right flank : CCTTCCCTTGGCGTACGGCGTCGGGGAGCCAGCGGTCGGCCCGGCCGACTGGCAGTCGCCCTCCGGGGCGGCCGCGGATCGCAACCGCCCGGCAGGGGAAACCCCGGGCCTGGGGCTCAGTCGTCGGGGGTGGTGTTGGACGCGTCGCAGGACCAGCAGGTCCACTCTCCGGGCAGTTCGTAGTGCGTGGTGGTCCAGAACCCTTTGGGGCGTCCCCGGATCACGTTGATCTCCCAGCACCGCCAGCAGTTGAACTCGAATTCTTCCACCACTTCAGCATCAACAGCTTTGGGTGATCGAGCGGCCGACTGCCCGAAAGTCGACCAAATGCGGCTGAATCGTCAGGCTTGCCGAGCAGTCAGGGGTCTGGGCAAGCCTTCCACCTGGTCTCTTCGTGGGTTGGGCAAGCCTTTCGGCAAGTGGGCGTGTGGAGAGTGGGGCACATCCGTTCCCGAGGAGGTGTGCCGTGCACGACTGCGGACCGGCGCTGACGCCGTACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1828-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLT01000035.1 Streptomyces albidoflavus strain FXJ8.011 Scaffold18_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1827 29 100.0 32 ............................. CCGTGGAGAGCCTGCTCGCACACGTCCAGGTG 1766 29 96.6 32 ............................C GCGATGCGGGCGGCCTCGATGCCGTCGCGGAT 1705 29 96.6 32 ............................C GGGTACTCGCGGTCGATCTCCGTCATGTACGC 1644 29 100.0 32 ............................. TGCGTCCGCAGCCAGCACTGCCAGGACGGCGT 1583 29 100.0 32 ............................. GCCGCGACGGAAAGGACGCCGCGACCGCGCAC 1522 29 100.0 32 ............................. CCCCAGATGCCGCCCGCCTGCCCGGCCACCAC 1461 29 96.6 32 ............................C TTGCTCCTCTGCGGCAGGGGCGGGCTGATGGC 1400 29 100.0 32 ............................. CACTCCCAGCACGCCGAGCGACTGTCGAACCG 1339 29 100.0 32 ............................. CTGGTCCCGCCGCCGGTGGGCACCTACCAGGT 1278 29 96.6 32 ............................T CCGCGGCCGCGCGGCCCGGCGGAGTGGTCGCC 1217 29 96.6 32 ............................C CTTACGGAGACAGCGAGGCAGATCACCCTTGC 1156 29 100.0 32 ............................. GGGAGGGCTTGTTGTCTGTTGTGGTGCGCGTT 1095 29 100.0 32 ............................. CCGTACGAGCGCCCGGCCCCGGCCGCCCCGGC 1034 29 100.0 32 ............................. GCGTCCTGGGCCGCCTTCGGGTCGAAGATGTA 973 29 96.6 32 ............................T GGCGCACGCGCACCTGCGCGGCGACCTGGTCC 912 29 100.0 32 ............................. CCGACCGGAACCACAGACCAGCCTGACGCTGA 851 29 96.6 32 ............................C ACGCACCCCAGGGCGAGATTCCCGCCCCACGG 790 29 96.6 32 ............................T CCCAGGTCCGGCTCGGTGGCCTGGTAGAGGAG 729 29 100.0 32 ............................. CCCTGACCGGTGACGAGCGCCGCTGGTCCCGG 668 29 100.0 32 ............................. ACGTTCGGGCAGGCCGCGGCAGACGCCATCGA 607 29 93.1 32 ....C.......................C GACAGCGGGTTGGAGCTGTCGGCGCCCTTCTC 546 29 96.6 32 ............................C GGCTGGTCCGACGTGGGCTACTCGTTCCTCGT 485 29 100.0 32 ............................. ATGGTCCGCAGTTCGCGGTCGCGGCTGCTGTC 424 29 96.6 32 ............................T GCCGTCGTCGTGGCGTCGCCGCGGTCGGACCC 363 29 93.1 32 ...........G.T............... AGGCTGGTGTTCCGGCGGCCGGTCCAGGAGTC 302 29 96.6 32 ............T................ CGACCACCACGGCCAGGCCGTTCGCCTCTACC 241 29 100.0 32 ............................. ACCGCATCGGGCCAGTGGCAGCACCGCTACGT 180 29 100.0 32 ............................. AGCTGATGGACGCCCTTCAAGGGCTGCTCGCC 119 29 89.7 32 ...........T.C..............C TTCCAGACGCCGAGCCACTCGTCGCCCCAGGC 58 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 97.9 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : AATGAGGCATCCTCGCGGTAACCTCGCAGGTCAGCAAG # Right flank : GGGACCGGGGTGCTTCTGGGGGTACCGCGT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3086-4945 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLT01000020.1 Streptomyces albidoflavus strain FXJ8.011 Scaffold18_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3086 29 96.6 32 .............G............... CCGTGCGCGGCGGCGGCGTCCCGCAGCGTGTG 3147 29 93.1 32 .............G..............C TCATCGCCCTCATGCCGTGGCTGTCCCGCGCA 3208 29 96.6 32 .............G............... ACCGAGCTCCTCGCCGAGTCGCCGCTCGGCCC 3269 29 93.1 33 .............G..............A GGGCGAGGAGGCGACGATCTGGGAGGAGGTCTG 3331 29 93.1 32 .............G..............C CCGTGCAGGCGCAGGCCCATCCCCCACAGGGT 3392 29 93.1 32 .............G..............C GACTCGGAGCGGAGTTTCGACGTGAAGCGGCT 3453 29 93.1 32 .............G..............C TGCCTGCTGCTCTGCCACTGCGGGGCGGTACG 3514 29 93.1 32 .............G..............C ACGCGGTACGCGAGGGTCACCCGGCGGGTGAA 3575 29 96.6 32 .............G............... CCGCCGGCGGTCGGCCCCGCACCCGCGGGGAT 3636 29 93.1 32 .............G..............A CCTGTACGGGGTGGGCGCCTACATGGCACCGG 3697 29 96.6 32 .............G............... GAGATGGCCGACGGTGCGGCCGGCATGCTCGG 3758 29 96.6 32 .............G............... TGCCAGAGGTGCTCGTGCTCGGGATGGCGTCG 3819 29 89.7 32 .............G..........T...C GAGTCGGGCTTCGTGGCCGCGACGATGAACGG 3880 29 93.1 32 ........................T...C ACGTACCGAGACGAGAGCGAGGAGCCGATCGA 3941 29 93.1 32 ........................T...C CTGGTCGTCGCGCCCGCCGCCCCCCGCACCCC 4002 29 93.1 32 ............A...........T.... GACGTGGGGATCACCCCGCCCGGTGGCTCCGT 4063 29 96.6 32 ........................T.... AAGCAAGCCGCGGGCGTTCCCTGGCGTCAGCG 4124 29 96.6 32 ............................C GCTTCTTCCTCGGCCGCCCGGCCGACTCCGCC 4185 29 100.0 32 ............................. CAGCATGACGCGAGTCCTGTTCTCACACCGGG 4246 29 100.0 32 ............................. GAGACCAGCACGGTGCCGTCGGGGTCCTCGGT 4307 29 100.0 32 ............................. GACGTGGACGCTATCCGGCAGCAGCGGCAGCA 4368 29 100.0 32 ............................. CTGGCGGTGACCTCGTGAGCGCCCGAGGCCCG 4429 29 96.6 32 ............................C TCCGGTGAGTGCCGTGTCGGCTCGACCGGACA 4490 29 96.6 32 ..........T.................. GGTGGCCGGCCACACCGAGGGCCGCGTCATCC 4551 29 100.0 32 ............................. CGCCTCGACGTGTACGACGGGAGCCAGTGGGT 4612 29 96.6 32 ............................C AGCACCGGCATGGCGCCGTGGGAGAGCGCCTT A [4623] 4674 29 93.1 32 ..T.........................C TCGCGGGCGTCGGGCCCACCGTGCTCTACCGG 4735 28 89.7 32 .............-.C............C GCGGTCAGCACCAGCCGGTCGGCGTCCGGTAC 4795 29 96.6 32 ............................T CCGCAGGCGCCTGTCTCCGGGCCTGCCGCGTC 4856 29 100.0 32 ............................. GGGCGCCGCGTGATCTTCGGCGATGCCGACCC 4917 29 93.1 0 .........................G..C | ========== ====== ====== ====== ============================= ================================= ================== 31 29 95.5 32 GTCGGCCCCGCACCCGCGGGGATGCTCCG # Left flank : GTGGGCGGAAGCGGTCCGCGATGCCGTCCGACCTGCGGCGTAGTATCCGGCCGTGGACATCCCCGACACCTTGATCGACCTCCAGCGCGCCGCCGACGCGGAGTGGGCGCGCCTCGCCGAGCTGACCGACAACGACGAGCGGGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACCGAGTGGGCGCGTGAGGCCGCGCGGCAGTCGGCCCCGCACCCATGGAAATCTCGCTCGCGACGGTCCTCGCCCTGGCGCTCTGCGGCCGGCGGGCCCACTGGGTGCTGGGCGCACGGCAGTTGCCCACCGAGGCACATGCGTGGGTGTGGACCGAGAATGGCGTATTCGGGCTGTCCGGCCGCGACCGCGTGGACCTCCGCCGCCTCTGGGCCGGCGCCCTCGTCGCACCTCCCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CGCCACGGCGCCTAGTTGACCTGAGTCAGAGATTCGTCGGCAGTAGGTGGCGACTTATTTCGAGGATTTCGTCGGCCGTCTTCGTCCAGACGAAGGGCCGCGGGTGTTCGTTCCAGTCGGCGAGCCAGGCACGGATGTCGCGTTCGAGGGCCTGGACGGAGCGGTGGACGCCTCGCTTGAGCTTCTTCTGTGTGAGCTCGGCGAACCACCGCTTCACCAGGTTCAGCCAGGACGAACTCGTCGGTGTGAAATGCAGGTGGAAGCGGGGGTGCGCCAGCAGCCACTGCTTGATGGCCGGCGTCTTGTGGGTGACGTAGTTGTCCAGGATCAGGTGCACGTCGAGACCGGCGGGGACTTCTTTGTCGAGCTTGGTCAGGAACTTCGCGAACTCGACAGCCCGATGGCGCCGGTGCAGGGAGCCGATCACCTTGCCGGTGGCGACTTTCAGGGCAGTGAACAGGGTGGTGGTGCCGGCGCGGACGTAGTCATGGCTGCCGGGT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCCG # Alternate repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12350-14625 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLT01000020.1 Streptomyces albidoflavus strain FXJ8.011 Scaffold18_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================== ================== 12350 29 93.1 32 .............G..........T.... GGCAGACCAGCCAGTCGCCGAAGTCCTTGTCC 12411 29 89.7 32 .............G..........T...T CCCGGCCTTCCGGCGTGCCGGGCCGGTTGCCC 12472 29 89.7 32 .............G..........T...C CCGATCGCCGCGCTCAAGCAGATCACCTCGGG 12533 29 93.1 32 .............G..........T.... AGGGTCAGCGGCTTCTACTTCGTCCGCTGATA 12594 29 89.7 32 .............G..........T...C CGCGACCGGTCCGGCTCCACAGGCGGCCGAGG 12655 29 93.1 32 .............G..........T.... GACCGACCGGCGGAAGAGTGCCCGCCGTGCCG 12716 29 93.1 32 .............G..........T.... TCGACGCCGTCCGGAGCGGAGAGGAACGTGCC 12777 29 93.1 28 .............G..........T.... CCGGCGACATCGTGTACGTCACGGTCAC 12834 29 93.1 32 .............G..........T.... CCGACGAAGAAGCCTTCGCCGCCGCGCCGCCG 12895 29 93.1 32 .............G..........T.... CGGGGCCTGACCCGCTCCAGGCGCCGCAACGG 12956 29 89.7 32 .............G..........T...C TCACCGGCGACGCGGCCGGGGACGTCACCGCG 13017 29 89.7 32 .............G..........T...C CTGTCGGGCGTGGCCCATGACCGCGCACTGGA 13078 29 89.7 31 .............G..........T...T ACGCGGGCCAGGCGGACGGGACCCGCGTCGC 13138 29 93.1 32 .............G..........T.... ACGTCCTCGACGTCGCCCAGCTCGCCGAGATC 13199 29 89.7 32 .............G..........T...C GGCAAGGACTGGTACCCGCAGGCGCAGTACGA 13260 29 96.6 32 ............................C TCCCCGGCCGACTCCGCCTGCTCCTCGGCGAC 13321 29 100.0 32 ............................. CCCCGTACGGAGCGCTGCTACGGCTGCGGGCG 13382 29 100.0 32 ............................. GAGCGCCCGTATCTCGCCGCTGAGCCTGAGGG 13443 29 96.6 32 ............................C GGCATGTGCCCCAGCACCCACCCGGCATGATC 13504 29 100.0 32 ............................. TCGATACCGAGGGCGGCCCGGAGGCGCCCGGC 13565 29 96.6 32 ............................C AAGATGATCAAGGTGGCGGAGACCATGCGCCG 13626 29 96.6 32 ............................C CCTACGGCTACTCCACCCGCTGGAACCCCGAC 13687 29 100.0 29 ............................. GTGTGGCCTTCCTCGCCCGCCGCGTCGTC 13745 29 96.6 32 ............................C CGCGTGGACACGGTGCGGGTGCTGCCTACGCC 13806 29 100.0 42 ............................. CGCCTCGCCCCCAATCGCCCCCAACATCGGCCTTGCCCGCGT 13877 29 96.6 32 ............................C AGTTTGTTGCATAGGCGTTACGGAGTCTTGCG 13938 29 96.6 32 ........................T.... CTGCACTCCGCGCCGGTGGTGGCGAGGATGTC 13999 29 100.0 32 ............................. TGAGCCCCGATCGAATGACCACAGGCTGGCTC 14060 29 100.0 32 ............................. TGGGCCGCGACGTCCGCGTAGCCCGTCCCCGC 14121 29 100.0 32 ............................. CTCCGGTTCCTCGGCGGCGCGATGGACGCGGC 14182 29 93.1 32 ......................C.....C TGTGCCGCCGCGACGGCTGCAGCCAGGTCGTC 14243 27 93.1 27 .............--.............. ATGACCGTGCGGACCAGGCCGTCGAAG 14297 29 79.3 32 ..G.TAT.G..C................. AGGCTGGTGTTCCGGCGGCCGGTCCAGGAGTC CC [14313] 14360 29 93.1 32 ............TG............... TACACCGCCCGGCGCTTTTGGCCCCGGTCGCC 14421 29 96.6 32 .............G............... CCGCGCCGCTCGTACGGCATCCACTCGGCCGG 14482 29 96.6 86 .............G............... AGCACGGCGGATCACCTCCGTCTCGCTCAGGTGTAGGCCGCGAGGATGCTTCCGATGTCGCCGCTCGATGGCGACTCGATCCGGAG 14597 29 86.2 0 .C.........G..............T.C | ========== ====== ====== ====== ============================= ====================================================================================== ================== 37 29 94.2 33 GTCGGCCCCGCACCCGCGGGGATGCTCCG # Left flank : CGCGCCGGCCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGCATCGCCGACCGCGTAGTGGTCCTCCACCACGGCCGCGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAGCGGAACCGAACTGGTCCCGTGAACATTGCCCCCGCCTGGCGTCGGCCCTCCCACACGTGACCCCATTCCACGGGAGAGTACAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCCCGTACCCCCAGCAGAACCAACAGCCACCTCAGCGCGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGTGTGACACCCTCCGATTCCGTACGGTAGGCGAGCCTCTCGCGGAGGTCGCGTACATCGCGATCTCTGACGATCCCCATTCGCTCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CACTCCGTGCCCCCGTTGCCACCCCGCCCCCGAGGCGCTCCGTGCCCGTGTCGTTGCCCATCAGGCGGAACGCGAACAGCTGTTGGACATGAGCTGATGACTGGCACCAGGTAGTTGGCGAACAAGCTCCCTGCCCAACCTCACGGCCTATCCCGTGCCCCTCCTCGGCCGTCGGTCTCTCCCCCGACGTGCACCAGGAAGTCCTGCTTCTGGTCGAGTACGTCGACAAGGACGTCGTCGTTGGCTCACACAGAGCAGCCGAGCCCCCCAGGCCCTCGTGACGCGGCCCTGAGGACCTGGCCTGATCAGCGGATCGGGTCAGCGGGTGTTGAGGACCTGCGCCTCGCGCAGGTCAGCCACCAGTTCGGTGGTGCGGGTTTCGGTGAGGGTGCCGCCATCACCGCCGGTCGCCGTCCACTCGATGTTCCAGTGGGCGGTCACGATGACCGGGTACTCGCCCGGCCGTTCGTACCGGTGCCCGCAGTCCGGGGACATGGCCT # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCCG # Alternate repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2604-2027 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLT01000038.1 Streptomyces albidoflavus strain FXJ8.011 Scaffold23_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2603 29 93.1 32 .........A..................C CCGGGTGGGCGCGGTGACGAGCTGGGCGCCCG 2542 29 100.0 32 ............................. CGGTAGCGGCCCCGCCGAGGGCCCAACTCAAG 2481 29 93.1 32 .............T..............C TTCACCCTGGTCAGCTCCGATCACCTGCCGAC 2420 29 96.6 32 .............G............... GGCGGGGCGAAACGGCCGGGCGGGTGCCGGGC 2359 29 96.6 32 .............G............... GTGACCGGCGCCATCGGCCTCGGCACCATCGA 2298 29 93.1 32 .............G..............C TGAACCCTGGCCGGCCCTTCCACGACGACCGG 2237 29 100.0 32 ............................. TACCTGAAACCGCAGCGCCTCTTCTTCGTCGG 2176 29 89.7 31 ...........G...............TC TGTCCGAGCGGGACGCCGCGCTCAGCGTGAA 2116 29 79.3 32 ..............T....A.GCA.C... CCACCTGCGGCGAGGCTCGCGGGCCACGACGT 2055 29 65.5 0 ...CT.T....G.GA....A.G.A.C... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 90.7 32 GTCGGCCCCGCACCCGCGGGGATGCTCCG # Left flank : CCTGCTGCCGGAAGTCCTTGTGCACTGGGACAGTGCCGACAGACAACAGACTTGGGCCCGCCCCTGGAACTCTTCGAGCAACGAGTCAGACATTGACCATCCCGACGTGCCCGCCCGACCGTTCTGGGCGACCGACGAAGGAGGCCACGACCAAGTCGGCTGCGTGTACACGGCCCAAGGCATGGAGTACGCCTACAACGTCGTCATCATCGGCGGGGACCTAGTGCGCCGTGGCGACCGCTGGGAAGCCCGGCCTGACGCCAGCGAGGACACCACACTCAAAAGCTTGGCGCCGGACCAGTACCTCCGGTACGCGCTCAACACCTACCGCGTCCTCGCAACTAGAGGCACCCGCGGGACCCGCTTCTATTCCACTGACGCCCCCACACAGAAATACCTGCGGAAATTGCTGCCATGTCATAAGCCTTGACTGCTTGGATGGCCGGGCCTCGACCTCGCATTCCGAGAGGCCGTTACGTACCCTGCGATATCGCTCATTC # Right flank : TTGATGCCGTGCCCGAGGACGACGACGCCCTCTCCAACGTGAGCGGAGGAAGCCCGCATCAGGACCTCGGCCAGGGAAAAGACGAGGCCTCTTCGCGCCTGCGGGGATGCTTCAATCTCACTGGGGAGCGGCGCGGTCAGCGTGCGGCTGTTCCCGCGCTCGCGGGGATGGCCCTTGGCGGTCATTTCGGCGAACGGCACGTTGGCTCCGTACTGAGCTGAGCACCCTCCGGGCAGAGTTATTCCATCCGACCAAGGGAGAGACTGCAGTGTCGTCCGTTCCCCGCTCAGAACGATACGAGAACATCCCGACCGCCTTGGTGTATGACATCTTCGCGGAGTTGGCCACCCAGCTCACCGGTCGCTACATCCGTCTGTCCGATACCGCACCGTCTGCCGCGGAGCGGGACCAGTGGTGGCAGAAGGCGCTGGAGCTGCGCCAGTACAAGCGCGCAGTGCCCGCGCGCGACCGGGCCGCGTTGATAGCCCACATCAGCCAGT # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCCG # Alternate repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7213-6332 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLT01000038.1 Streptomyces albidoflavus strain FXJ8.011 Scaffold23_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7212 29 100.0 32 ............................. GTCGAGTCGAGGCGCCACCAGCTCGTCTGCAC 7151 29 96.6 32 ............................T CTCGATGCGCCTTCCGCCAGCGACATTCAGAC 7090 29 100.0 32 ............................. TCGCGCGGGGCCCACGTGGTGGCCTGCACGCG 7029 29 100.0 32 ............................. TCGCCGGTCGCCGGGTTCTTCTCCGCGCGGGT 6968 29 96.6 32 ............................G TACGGCTCACCCGCCGTACTGCGGCCGGAGCG 6907 29 100.0 32 ............................. CGGCCCCCGGGCGGATTTGGGTCAGTCTTCCT 6846 29 96.6 32 ............................T CCAGCAGCCAGTTGCCCAGCTTGGCCGTCTTG 6785 29 100.0 32 ............................. AGCACAGCCGGTGCCTACCGCATGCAGGTGGA 6724 29 96.6 32 ............................G ACGCGGCCGCCGTGGGCCCACACGACGGACAG 6663 29 100.0 32 ............................. GCCTCCAGATCGAGGCGCCGCTCCAGGGACTC 6602 29 96.6 32 ............................T CGCTCATCGTCCTGTCGATGTCGGCACAGAAC 6541 29 100.0 30 ............................. CCGGGCCCCAGGGCGCGGCCCGCACCCCTG 6482 29 96.6 32 ............................G AGGCCGCGGCGCTTGCGGGTCTCGCGCTCCTC 6421 29 96.6 32 .............C............... GTCGGTGAGCTCCAGGTGCCAGCTGCCGGGGT 6360 29 93.1 0 .............C.......G....... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.0 32 GTCGGCCCCGCACGCGCGGGGATGCTCCC # Left flank : AATGAGGCATCCTCGCGGTAACCTCGCAGGTCAGCAAG # Right flank : CGCAACTGGATGCGCTTGCCCTCGAAGGGCGTTCGCCGCCCCCACGGCAAGGTTCTTCTCCCACCGACGACCGGAACAAGTTCTGGCGCGATCTCATCAAGGCCATGACGGAACAGGCCCGCAATCTCACTGCCGACACGCGGGCGCCGAAGACCCGGCCGACGCCCTGCCACTCTTCTCATTCGGTTGACGCGCCGACCAGACTGCCCACGCAAAGCTCTTGCCAAGAGAGGTAGAGGTCGTCGGCTGCGTCCTGAAGGCTGCAGACCTGCTTTTACTGTCGGCGACTGGGCCTCGACGGTCGACTGGTGCCGCCATCGAGGCCGTCTGTCATGCCGAGGGGACGTCCTTGAAGGTGTGGGTTCGATGCCACTGGTAGTAGGGCTCTCTGTTGGCGTTCCACCATGAGATGGTCCGGCCCTCCAGCTTCTCCCGGATGTACGTGGCGACTTCGGGGCTGTCTGCCGCCAGCGGACTCACGCGAAGAGCGCCGGCGGGAT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 357172-356899 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLT01000018.1 Streptomyces albidoflavus strain FXJ8.011 Scaffold2_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 357171 29 93.1 32 .............GT.............. CCGAGCGGCGCCCTGCAGAACCCGCTCTTCTG 357110 29 100.0 32 ............................. ATCTACGGGATCGCGGCCGAACGGGACCGGAC 357049 29 100.0 32 ............................. TGGGTGGCGTCGATCTCCATGAGCACTTCGGC 356988 29 96.6 32 .........................T... GAGGCCGCTCCGGTCGTCACGAACATCATCGA 356927 29 86.2 0 ..............G......CAA..... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTGGTCCCCGCGCACGCGGGGGTGGCCCC # Left flank : CAAGACCACACCGCGCCGACCTCTACGCCACCGGCAAAGTCCGGTACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCTGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTAGGTCGTGTCCTTCCAGAGCCGACCGTGGATGTCCGTGTGGCAGGCCCGACCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGGCGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCGAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGGTGCGTGGGGGGGCCGGGGTCTGCTCCGCCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGGACTCAAGGCGAGGTGGGCATTTTGGGGCGAATGTCGCTATCGGCGAAGCTTGCGGAAACTGGGGCAGGGGCGCCGTAAACCTGCCGGCCAGGGAGA # Right flank : ACCCCGCCTCACCCCGACCCGGCGCCCAGCGCCGCCACCCGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCGGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGCGGGAGTGCGCGCGGGCTGGCGAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCACGGTGGACGCCGACGACGACCACGCGTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //