Array 1 131976-134714 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRO010000005.1 Streptococcus thermophilus strain Brie16 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 131976 36 100.0 30 .................................... TTTTTGGCTATTAAACCTGCCCACGCTGCC 132042 36 100.0 30 .................................... AGCATTTTGAGCAAATATGCCCCTCTATCA 132108 36 100.0 30 .................................... TAGCTACACATGAATTTTATTACAATGGTG 132174 36 100.0 30 .................................... TATACACCTAAAAAAACATCTGTTGTTAAA 132240 36 100.0 30 .................................... CAAGTGGGATGAAATTAACGACGAATCCAA 132306 36 100.0 30 .................................... TTCCCGGCGTATATACTGGCTCGATTGTTT 132372 36 100.0 30 .................................... TGGCGTGTTCGCAGATATGTACTTCAATGA 132438 36 100.0 31 .................................... AAGCTGTGATAACACGAAGAGAACTCTAGAG 132505 36 100.0 30 .................................... GCTGGCGAGGAAACGAACAAGGCCTCAACA 132571 36 100.0 30 .................................... TTAACCAATTTTGTATAAGCGTCCATTTCA 132637 36 100.0 30 .................................... TGACCTGTTTCTCTTTATTAACTAGAATAG 132703 36 100.0 29 .................................... TCGGACTGATACGAACAGTATCGCCAGCC 132768 36 100.0 30 .................................... GCTAAAGATGACCTGTATATTGAATTGATC 132834 36 100.0 29 .................................... CGAATAACGAACGACGTCTAACAATCTTA 132899 36 100.0 30 .................................... GAACAAGACGGTATAAACTATCGAGATTTA 132965 36 100.0 30 .................................... GTGTATGCAAACAACTTGCCAAAAGAGCTC 133031 36 100.0 30 .................................... CCAATTATGGTTAATTGTGAGTTATTCACT 133097 36 100.0 30 .................................... GCTAGTATTGGTGATTTAACACCAGCGGAA 133163 36 100.0 30 .................................... ATCGACAAAGCAACAACACGCTTAGCATCG 133229 36 100.0 30 .................................... AGAAATTCATGGCTGAAAAACTTTGGCATA 133295 36 100.0 30 .................................... ATATATGTATTTAAGTACACAAAAGACCCT 133361 36 100.0 30 .................................... TGCAAACAAAACAGTGCGATCGCTTGCAAG 133427 36 100.0 30 .................................... AATTAAGGGCATAGAAAGGGAGACAACATG 133493 36 100.0 30 .................................... CGATATTTAAAATCATTTTCATAACTTCAT 133559 36 100.0 30 .................................... GCAGTATCAGCAAGCAAGCTGTTAGTTACT 133625 36 100.0 30 .................................... ATAAACTATGAAATTTTATAATTTTTAAGA 133691 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 133757 36 100.0 30 .................................... TGCATCGAGCACGTTCGAGTTTACCGTTTC 133823 36 100.0 30 .................................... TCTATATCGAGGTCAACTAACAATTATGCT 133889 36 100.0 30 .................................... AATCGTTCAAATTCTGTTTTAGGTACATTT 133955 36 100.0 30 .................................... GCTTAGCTGTCCAATCCACGAACGTGGATG 134021 36 100.0 30 .................................... CAGATAGCTGTTAAGTCGCCTGGCTGATAA 134087 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 134153 36 100.0 30 .................................... TGGAAACTAAGAAATGCAATAGAGTGGAAG 134219 36 100.0 30 .................................... AAATCTCGTAGTTAGTACAGTAGGTTTCAA 134285 36 100.0 29 .................................... TCATAGCGGATTCGAACCGCTATAAGCCC 134350 36 100.0 29 .................................... CATGATTTACAACCACGCGCTAGACCAAG 134415 36 100.0 30 .................................... AAGTAGTTGATGACCTCTACAATGGTTTAT 134481 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 134547 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 134613 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 134679 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 42 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 8717-6437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRO010000018.1 Streptococcus thermophilus strain Brie16 Contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8716 36 100.0 30 .................................... CAGACGACGTGGCTTACCCATTCGTTGTAA 8650 36 100.0 30 .................................... TAGTCGTTCAGCAATTACTAGGATCAGAAA 8584 36 100.0 30 .................................... TAGAAGACCTTCAAGTTGGATTACCTTGCG 8518 36 100.0 30 .................................... TTTTACCCACCAAATCTAAAGCGTCTATAC 8452 36 100.0 30 .................................... TAATCCGGATCGCAACGTCATCCGCTATGC 8386 36 100.0 30 .................................... CACTAAAATCAACGATGTTTTAAGGCAAGG 8320 36 100.0 30 .................................... CTCTCCGTTGCGCGTTTTCAAAATCGGCAC 8254 36 100.0 30 .................................... TTTCAAGAGCCTGTTTGTTATAGTCAATAC 8188 36 100.0 30 .................................... TAGAGGTAATGACGGACTACCAGGTAAGGA 8122 36 100.0 30 .................................... TCCAAGAGGGAGCACGGTAAGTGTCTCAGA 8056 36 100.0 30 .................................... AGTTGTGACTTCGCTTTCGCTTGGCATCCA 7990 36 100.0 30 .................................... TTTCCAATGCCGTGATGGTTTTCGTCAGGA 7924 36 100.0 30 .................................... CAAGGTATACGGCATCCCTGATAACGTAGT 7858 36 100.0 30 .................................... ATTCCATTACAGTTGTTATGGTAAAAATGA 7792 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 7726 36 100.0 30 .................................... TGCTTGTGCTTTTGTAATTTTTGCTACTGT 7660 36 100.0 30 .................................... GCTATGATGACTTGCTCAGTATGTTTAGTT 7594 36 100.0 30 .................................... CTTTGAAGAAGTATTTCAAAGGCAATAAGA 7528 36 100.0 30 .................................... TACCTCCCTGGCAACTTGCCCTAAATAGTT 7462 36 100.0 30 .................................... GTCAAATACCATCTTGTTGTTCTCTATTTT 7396 36 100.0 30 .................................... CCAAGGGATTCAAGGACCACAAGGCCCTCA 7330 36 100.0 30 .................................... TCTTGATAAATAACCTCTAACGCTTCATTT 7264 36 100.0 30 .................................... CTCAATGGTTGAGGATTATCTTGAAAGTAA 7198 36 100.0 30 .................................... CATCACTGACATGGGCGATGGCGGCTACTA 7132 36 100.0 30 .................................... CGGGCTTAACATTCCACACAATATCCAAGA 7066 36 100.0 30 .................................... TACGGCTATTGGTTTTGTTTATCCATATGT 7000 36 100.0 30 .................................... TAGGACATCGTTTTGTGGAACGTGTTGTTT 6934 36 100.0 30 .................................... CTTCAATTGAATTGAGTATCTCGAGATAAG 6868 36 100.0 30 .................................... CATCACAGATACCGGAAACGGTGGTTATTA 6802 36 100.0 30 .................................... CATAGGTCATAATAACTTCATCGGTTGGAA 6736 36 100.0 30 .................................... ATAGTATTAATTTCATTGAAAAATAATTGT 6670 36 100.0 30 .................................... ATTCGCCAAAATCGCACCGTTAACACTCAA 6604 36 100.0 30 .................................... GCATTGACAGGCGATATCGTGTTGATGTCT 6538 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 6472 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 35 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AATGATAAACCTGAAGTTAGATCAGAAATAGATTCTTTGGTATCATTAATTACTGATATTATAATGGCAGAGTGTATAGAAAATGAACTAGATATAGAGTATGATGAGATTACACTTTTAGAACTAATTAAAGCATTAGGTGTCAGAATCGAAACTAAGTCTTGTACGGTTTTTGAAAAAATATTTGAGATTTTACAGATTTTTAAATATTTAGTTAAAAAGAGAATTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTTCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //