Array 1 24751-25430 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANCE01000113.1 Leptospira kirschneri serovar Bulgarica str. Nikolaevo ctg7180000006143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 24751 37 100.0 36 ..................................... ACGACTTACTGGGTTTTTCGAAGGAAACCCTTGCAG 24824 37 100.0 34 ..................................... TCGTTCGATCTCCCACCAATTCAGGGTCTGTAGT 24895 37 97.3 37 ...................A................. AATTTGCAAAATCAGACACCGGACAAATGATCGGAAG 24969 37 100.0 34 ..................................... GTAGGAAAATTTCGTGACGCAAAAGGCCGAGTCT 25040 37 100.0 35 ..................................... GGTGTCGTAAAGATCGTGTCCGGAGAGTGCAGAGT 25112 37 100.0 33 ..................................... TGATTTTTCGCCGATTTCTAGAAGTTTGTATGC 25182 37 100.0 34 ..................................... GCGTTTGTTTGTTAAAAAATTTGAGAACACTTCC 25253 37 100.0 34 ..................................... TATGATCCCACCATCGCCAGCGATCGGATGCTGT 25324 37 100.0 33 ..................................... TACAATGTTCGCAAATCATTTCAGTTGATTTAA 25394 37 75.7 0 ...................A......AAAGAAC..G. | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 97.3 35 GTTCTTTCTCTTCTTTAAATGGAGAGTGGATTGAAAC # Left flank : ACACAAAAAGGATCGATGCGATAGGAACTTTAGCAAAACACTCTTTCAAACTAAAACGTCTCACTGTTCGACAGATTCACATACTACATTGGATTATACAGAATTCTCCTAACCGACGCTTTATAACAACATTTACCGAGGTTCAATTTTATGGGATGAGTAAAACATATAATATAGCAACAAACATAATTCAAAATACGAAACACAGCGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCCTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCGACCTATCAAGCCGCT # Right flank : CAAAGCCAATCCAGATTGTATTCAATTCCGACAGAACCCAATTTATTTCAGTTTGAATTCTCTATGACAAAATAGCGCCCCTTCTGAACTTGAAAAGAGCGAGTTCGGCCGAGAAAAAATTCTCTAAAAGTATGATATCAGAATTTGTTCGTAAAACCGCGATTCGTGGTAGTTCCCACATTTTAGGAATTGATCTGTAAAGTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAATGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 32992-33375 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANCE01000149.1 Leptospira kirschneri serovar Bulgarica str. Nikolaevo ctg7180000006156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 32992 37 100.0 35 ..................................... AAGTTCAGCGTAAAGCCATTCGGTCACCCTTTCGA 33064 37 100.0 38 ..................................... TATTAACTATAACGTAACAGGGAGACTACTCCAACCAT 33139 37 100.0 34 ..................................... TCCTGTCTGGCGCAACGGACTTAGACGTTGTTGA 33210 37 100.0 35 ..................................... CTCGACGTCGCTTTATTACTGTGGAAGCGATTTTT 33282 37 78.4 17 ..................CT.....T.TT....GG.T CGATTTCTAAGACATGC CT,G [33306,33315] Deletion [33336] 33339 36 73.0 0 ........T...A...G.-C.T..GT.C....T.... | G [33373] ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 91.9 32 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : TATTCAGAACCATACAATCAATTTCCCAGCATTTTATTTTTAAACAGGGTTTTGCAGTAAAACTTACAGCTCTCAATTTTTTAGAACTAAAGCAGAATGCTCTTTATGGATTGGGTTCTTTTTATATAGTCATAAAGTAAGAGAAAATTTCCATACTCTATAAAATGAGTTTTTGAGACCGAATTTTTACTAAACGTTTAAATCAATCTTCTGAAAATTCATTCCTAGATATTCATCTACTTAGGCTTAAAACTAAAAAGTTTATAGTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATGAAGCGCTTTTTGCGAACCTGTTTCTCCCGATCAATTGCGGCCCATTCGCGCTCAAACGAATAGCCACCGCTTAGCGGTTGAACAGCTTTGCTTAACATTTATACAGCATGGCGTCAGTAGGTTCGCAATAATTATGTCTAGAAAAACTAATAAATCTTTTCCTAATACATCAATTAGAGCCTGTGCAGCCGCT # Right flank : CTTTCTGAATTTATTTATAAAAATCACAGGTTGAATAAATTCCGATATTCAGCTTTTTATGATAAATTTCAGGTTTATAAAATGAATTGATTCAATCCAAGTTCTTTAAAACTACAGCAAATCTTTATTTAAGGAAAGGATACAAAAGACCGAAGCGGCAAAATCTCTAGACTTTCTTCTTCTTGGAAAACAATTGTTAATTAATTTTTTAGATAATTATAATATACTTGATTAGAATTTCTAAAAATTTTTATTTTACCGCTCTATAATCAAAACGTACCACAACTCAATTTTCTCCAGTTAACTTACAGGTGTCTCAAAACCAAATCGCACTTTATCAGAAAGATCAAGCTGGATAACGAAAGTGCCTCACTTCCATTGGCGCTCGACAAATTCTTATTATATTAAATTACGTTATCGCAAGGTTTTATTCTTTACCTTGAAAAAAGAATTTAAAATAAACGAACATGAAATTTTTTATCAGTTCCGAAATCGACGGA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:0, 3:3, 4:0.60, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 11858-10948 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANCE01000124.1 Leptospira kirschneri serovar Bulgarica str. Nikolaevo ctg7180000006179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 11857 37 97.3 35 ...................T................. AATTCTCCCGTTGGAAGTTTACAAGTCTTATACTC 11785 37 97.3 34 ...................T................. TTAATGTCTTCTACCTCTGACATGACCGCATAGT 11714 37 100.0 35 ..................................... ATGACGATGCGTATGCAATCGCGTTGTCCGGGGAT 11642 37 100.0 35 ..................................... TGCATAAGCATATGCTGCCTCGCCAACTTCCGAAG 11570 37 97.3 35 ...................T................. CATGATGCTCCTAAGAAGGAGCGATTAAGTAATAT 11498 37 100.0 35 ..................................... GTGAACTTCTTTTGTCTCTCTAAAATGTAAGATCT 11426 37 100.0 35 ..................................... GAAAAACGCGTCCTGTGCATCCTCGGTCAAGATCT 11354 37 100.0 39 ..................................... TCATATTTTCGGCGATGTTTCAAAATTTTTGGTCCTTCC 11278 37 97.3 35 ...................T................. TATAGATAAATTTGGAGAAAAGAAATTCTTAGAGT 11206 37 97.3 35 ...................T................. TGCTCTCATAGAGTGGCAAGCAGGAAAGACTGCAT 11134 37 100.0 34 ..................................... TGTTAACGTCGGTCTTCTTGAAGACTCTGATTCT 11063 37 100.0 36 ..................................... CGGAATATTGGGAATAGTCTTGTCCGTAGTCAGAAG 10990 37 94.6 0 ..........................A........G. | AAAC,AA [10955,10962] ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 98.5 35 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : TGATTCCGAAGATGCGCGTAAAAAAAATAGAAGGGTCAATTTTATCATTCTGAAGAAAAGTAAGTAAAACTTTTCTATATTTTAGATATTTAATAGAGTTGTTGAAAAATTCCATAGTGGCGATTCGTAAAATTGCTTCAATTGTCCATTCCAATCAGATCAAGAATTAATTTTCCAACAACTCTATAATTCAAAATACGAAACACAGTGTTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCT # Right flank : CAATCTAGAATAAAGTTGGGATTTGGACTTTGTAGATCGATTCTTTAAATGTAGGAACTACTGCAAAATTTCGTTCGGAAAAGTATGATTTAAAATCGCAAAAAAGATAAAAAGAGACGTAATCCGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTGTCGTATTCAAGTGTGGAACTACTGGTAAATCCACTATTTGTGAGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTTTCTATCCTCTGGACGTTAAATCGATACGAGGGAACTTTAGCAGAACGTTCTCTCAAACAAAAGACGAGATATTGTATTAGGTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAACGCGGTCCTGCAAAGCAGGATTCGCCTAAACTTTCTTAAGTAGAATTCGCATTATTTAGTGTAGATTATCGGATTGGATACTTTATTATGCAGCTCAGATCAGCGCGTTAAAATTCCCTTCTAACTTTTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : GTTCTTTCTCTTCTTTAAATGGAGAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 9942-8467 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANCE01000163.1 Leptospira kirschneri serovar Bulgarica str. Nikolaevo ctg7180000006306, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 9941 37 100.0 33 ..................................... TCTTTTCTACTCCTTGCGGGTGTGGGGTTTCTT 9871 37 100.0 34 ..................................... TCTTAACCCCGAAGAAGATGCGCTTGCACGTAAA 9800 37 100.0 36 ..................................... TTTTTCGAAAAATCAAATATTATCGTTGATAATTGT 9727 37 100.0 35 ..................................... ATTTTCCTTCGTATATGCGGACCCGAGAACAAGAC 9655 37 100.0 35 ..................................... CCAAGTTAACAAACCATTCAAACGCTTTCGTATCT 9583 37 100.0 35 ..................................... AGTATCGTTTGACTCAAACGCCGCTGCAAGTTTGT 9511 37 100.0 37 ..................................... TTTATACCTCTGGCAATCGGGACAGGTGCGTATTTAG 9437 37 100.0 34 ..................................... CATAATATTATTTTTTATGGTCCTTCTGGTTTAT 9366 37 100.0 37 ..................................... AAACCCGTTTCATGCATGACCACTTTTAACCGCTCAA 9292 37 100.0 35 ..................................... TTTCGTAAGGAGACCTATAGACTCACTCGTATATC 9220 37 100.0 35 ..................................... GATCCGAACCTGATCTAGGGCAAAAGAAGGCCCTT 9148 37 100.0 33 ..................................... CCCGTGGAATTCTTCGTCCCCTAAGAGGACTTC 9078 37 100.0 34 ..................................... CCATATGCGTCGAGTCCGACCCCTGTGTCGGTAT 9007 37 100.0 35 ..................................... AGTAACGGAATAGGCAAACAGTTTATTGACGAGAT 8935 37 100.0 35 ..................................... CACAGAATCTGTTTTTGTAAAATCATCTAAGTTGT 8863 37 100.0 38 ..................................... CACGTAAGGATTGCGTCATCGTCCATATCCGGATGAGT 8788 37 100.0 33 ..................................... TTTACAATATATTCGCCCTTGACGTTTTTCCTT 8718 37 100.0 33 ..................................... AAAAACTCTGGCTCGGTAGGGAAATCCTCTATC 8648 37 100.0 35 ..................................... TATAACAGGTCCATCGAAAACGAAACTACAGGGTA 8576 37 100.0 36 ..................................... TCCTTTGATGAAGCAAAAAAATATCAAACCCATTAC 8503 37 94.6 0 ........................G.A.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 99.7 35 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : GAGTTCGGCTGAGTAAATATTTTTATAAAAGTATGAGTTCCTACAATTTTAGAAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGTTATTAACCTTTTTCTTATACATTTTTGCGGGGCTTTTGAGCCGCT # Right flank : TAAATGCGTCAGCACTGACGCATTTAGTTGGTCTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTTCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGACAGGCCTTTGTTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTTAACATTCTAAATTTCAAATGAAAGTATGAAATTTTCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTTTAAAAAACGAACCTTTATAAAATTACAAATTTTAGCTACGCACATTCCACATAACGACCGTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTTTTTTTCCTCCGTTGGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 7427-6363 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANCE01000165.1 Leptospira kirschneri serovar Bulgarica str. Nikolaevo ctg7180000006284, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 7426 37 100.0 35 ..................................... TTTATCCTTATCTACAATTTTATTGGTCTCAAACC 7354 37 100.0 33 ..................................... TTTTGGAGACCTATAATTATGCTGAAAGCATTC 7284 37 100.0 34 ..................................... TAGACCATGGGCCAGCTCGGATCCTATAGGGAGC 7213 37 100.0 33 ..................................... ACATCTTGCAGGAAAGCAGACGAATGCTATATT 7143 37 100.0 34 ..................................... GTTTACCTCATCGATTAAAAACGCTTCTCCTGAT 7072 37 100.0 35 ..................................... CACGTTCCGCAAAAGTAGTTTTTACGGGCCGACTC 7000 37 100.0 35 ..................................... CACGTTCCGCAAAAGTAGTTTTTACGGGCCGACTC 6928 37 100.0 34 ..................................... ATTACGGAATGGGTGCGACGGTTGGTTCTGTATT 6857 37 100.0 34 ..................................... CCATATGCATATACCGCATACAGGATGTTTCCGA 6786 37 100.0 35 ..................................... CCGCAAGAAGCATATAACGTGAAACTTGTGCATGT 6714 37 100.0 35 ..................................... TCTTTTGACCTTCTTTCTCCTTGCGGGTGTTGGTT 6642 37 100.0 36 ..................................... ATTAACAGCGAGAATTCTCGATGTGTTCAAACAGAT 6569 37 100.0 134 ..................................... TTTGTGGGCGGTCTTACGACCATATTTGCCTACTCCATTAGAATGGAAACGACAAGCTTTGTGACATATTTAACTAATTTTAATTTTTTCTTTTTAGCAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGAC 6398 36 70.3 0 C......T..C.A.CG....-.A....AAG....... | ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 14 37 97.9 42 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : ATTCTACTTCGATAAGCATATATTCTGAAATACAATCCATTTAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAAGCCCTACAAATTTTTAGAAACAGATTCAGTTTAGACAAAATTCTGTACGCTCTGATTCTATGGTTTCTGAGTGAGTTAAGTTTTCAAGTCCAGCGCTTGGACAATCGTCTCAACAAGAATGAAAGAACCCTTGAATTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAGTCGCTTTTTGCGAACCTGTTTCTCCCGATCTTTTGCAGCCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTCGATTGAATGGGTTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : TACCACGGTCTTACGACCATATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTAAAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGCTAGAATTTGACGTTACGCGAAATTGATCGACGCAGGGAACTTTAGCAGAACGCTCTTTCAAACTAAAGCGTCTCACTTACTGAATGCCGATCTTTAGAGAATCATTCGCTGAGTTTTCTGGATCGTTAGACGGTATCGTGTTCTATAATCAGGTGAATTAGCGCGAAAGGGATCGATGCGGGGTTAATAAATTGCGACTTAAGACGATATGTTGCATTACATTTCCTGCATGCAATTTATTAACCGGAGCTAAAGAGCCCGGTCCGGCTGCCCATAGCAGCCGGATTCGCCCCGATTCTCCTACGCCGAATTCTTGTTAAAAAAGGAACTTTATAAAATCCATATCAAGATTCCAATTTTTGCATAAAAC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.71, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 3361-3110 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANCE01000035.1 Leptospira kirschneri serovar Bulgarica str. Nikolaevo ctg7180000006224, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3360 37 100.0 36 ..................................... GTCCTGACGAAGATTCACATGTTCAATTCTCTTCCG 3287 37 100.0 33 ..................................... ATTTTGGGTGCGCGCAATGTGGTAATGCTCGAA 3217 37 97.3 33 .............C....................... CTCACGTTTACGGATTTAGAATCAGATTGGGAA 3147 36 78.4 0 ..........A..G...G..G....C....A.-...G | TT [3119] ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 93.9 34 GTTTCTTCCTCTTTTTTAAGAGGAAGCGGATTGAAAC # Left flank : TTATAGAGAATTTTATTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTACTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGGCCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCCGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTAGCTTAACAATTGTACAGTATGGTAAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : TGTCTAAAATTTTGTTCCTGAAACGGAGATACTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGAATTGATTGCTCGGAACAATAATTTCTAAGTTTTGTGAGAGCTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAAAATAGGAGTTCCTTTTTATTTTTACGGACCAAAGTTTCTCTTTCGGAGAATATCTGGTTTGGTAAATTCTACCATGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAAATTAAGTCTTTTTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTCATAAAATCGGGGCGAATCCCGCTGCGCTTTCCGCTATAGTTAATAAATTGTATAAAAAAACATAATATGATATTTCGTCTTAAGTTACAATTGATTATAGAACCCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTTTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 46787-46399 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANCE01000050.1 Leptospira kirschneri serovar Bulgarica str. Nikolaevo ctg7180000006178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 46786 37 97.3 33 ................A.................... TTTTCCGAGCTTATCAATAAACGAGAGGATTCC 46716 37 100.0 33 ..................................... GCGTTCGGTTTGATTGACTTAACCGTCTCGATC 46646 37 100.0 33 ..................................... CTCTGGATATGCAATAGATTTGTCCATCCCAAT 46576 37 97.3 34 ................A.................... TTATATAATGGACACGTAAATTTGGGAGACTCAA 46505 37 100.0 33 ..................................... TAAGTCAAAAGGTAAAACTACAAAGCGTCGTCG 46435 36 83.8 0 ................A..........T.-.CA...A | G [46409] ========== ====== ====== ====== ===================================== ================================== ================== 6 37 96.4 33 ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Left flank : | # Right flank : AACGATTTATTTAAAAAAAAATTTTTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCTCTTAAAGAGAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTTAATAAACCATTGTTAAACTTTACAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTAAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 1805-4700 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANCE01000043.1 Leptospira kirschneri serovar Bulgarica str. Nikolaevo ctg7180000006232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1805 37 100.0 35 ..................................... CTCACGCATCCTTCAATTTTTAGACATTATGCTGA 1877 37 100.0 37 ..................................... GGTTTTCCGTTGTCATCCTCGCCGCGCTCTTTAATTA 1951 37 100.0 34 ..................................... TCTAAAAAGTTTCGCATAAGTGGTAGAACAATTT 2022 37 100.0 35 ..................................... TTTATCCGGGTTGTCAAAAAGAAAACCTTTCCAAC 2094 37 100.0 35 ..................................... TTGTTTAGAACCACTGACGTCGGCACCGCGGCAAA 2166 37 100.0 33 ..................................... TTTTGGAGGCCTATAATTATGCTGAAAGCATTC 2236 37 100.0 36 ..................................... TAGTCTTGACTCGAAAGTAGATCTTTTCATGGTTTT 2309 37 100.0 35 ..................................... TTTTTCGAACTCAATCACCCAAACCCAAGGGTTTT 2381 37 100.0 34 ..................................... GAATAGTTTGGCGGATGCACGAGTCTTCACTGAA 2452 37 100.0 35 ..................................... TCCTTGTCCTCGTCGTCAGGGCCAAGTCCGATTGA 2524 37 100.0 33 ..................................... TCAGACCCGGATGAAGACGGGCCATTTTGGATT 2594 37 97.3 36 ................G.................... CAAAGGATGAGTCAGAAAACTCGTAAGGTATTACGC 2667 37 100.0 35 ..................................... TGATCGAAGCAATGAATCCGGAGCCGCATGAAGGC 2739 37 100.0 37 ..................................... ATATCTTAACCCTTCCCATCGTCAAAAAAAAAGTAAA 2813 37 100.0 34 ..................................... TCCGATTGGTTCGGGAACTGGCGCGGGGCTTTCT 2884 37 100.0 34 ..................................... CTAATGTTAAGCGAAGATCCCGAAAGCCCGCTGT 2955 37 100.0 35 ..................................... TTGTCTATCACCCGCCAAGGACACCCCAAAGATTT 3027 37 100.0 35 ..................................... ATACTGCTCGCGAGCTTTTGTTTTATTCATATATT 3099 37 100.0 35 ..................................... CGAAATCGAAGTTTTTAACTCTCCCATTTTTGGAA 3171 37 100.0 34 ..................................... AAAAAATGATTGATCAACGGGAAAAAATGAATGA 3242 37 100.0 33 ..................................... CTTTTATAGCAATCGGCGCGGCTGTGGCCGCAA 3312 37 100.0 35 ..................................... TTTGCAGTCCCTTGTCACGTTAAACGTAAGCGAGG 3384 37 100.0 33 ..................................... TTTTGATGACGGGGAAGATATAGATGTATATTA 3454 37 100.0 34 ..................................... TTTAACCAGTTGTCTATGTCTTGCAATCCGGTTT 3525 37 100.0 35 ..................................... TCCGAATACAATTCCAAAGATAGGAACCAAGTAAA 3597 37 100.0 33 ..................................... ATTATAAATATTAGCCGGCTTGTAGGCTCGATT 3667 37 100.0 36 ..................................... TTTTTTATTACCGAGGCACTTGATTCAAAAAATAAC 3740 37 100.0 34 ..................................... GCGGAAGCGTGTCCAGGAAAATGATTCCTAACCT 3811 37 100.0 34 ..................................... ATTGCCATAGGAGCGGCGGCCATTGCGGCTTGAA 3882 37 100.0 34 ..................................... AATATTTTGGACAGATCACTGTCGACCCTTCTAC 3953 37 100.0 33 ..................................... ATTGTATCCGCTCTCGTTCAATACAACACGATG 4023 37 100.0 35 ..................................... ACTGGGACTTGTCGAAAGAAGATCGAACTACATTA 4095 37 97.3 35 ................G.................... CGATTAGGGACTGTGATGATAAGACGGTCCCGATT 4167 37 100.0 34 ..................................... TTGTTTGACTCTTGACTCAGATTTGCAAAATTAT 4238 37 97.3 34 ................G.................... CCTTCGTTACACCTTTAAACGACTTACTCAAGTT 4309 37 100.0 33 ..................................... AATGCAAGGCAAAGGCACAATCCGAATATTTTT 4379 37 100.0 35 ..................................... ATTTTCAGTAAAAACTTTTATAAAACAGTGATTTT 4451 37 100.0 34 ..................................... GCGGAAGCGTGTCCAGGAAAATGATTCCTAACCT 4522 37 97.3 35 ................G.................... TTTACCAAAATCAAACAATACTGGGATTTATATTC 4594 37 100.0 33 ..................................... TTTTCCGAGCTTATCAATAAACGAGAGGATTCC 4664 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 41 37 99.7 34 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTGGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATTTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAGGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATCCTTTTCGGCCGGTTCGCGTTTAAACGTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAGAGCTTTTTCTAATCCATAAACTTGCACCTTTTCGGCCGCT # Right flank : AAAGCTTGCGTTCATAACTCGGTTGTATGCCTCTATATTTCTTTCTCTTATTAAAGAGGAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 5786-4110 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANCE01000052.1 Leptospira kirschneri serovar Bulgarica str. Nikolaevo ctg7180000006191, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5785 29 100.0 32 ............................. ATCCGATAATGGATAGGAGCCATGTCCAAAGA 5724 29 100.0 32 ............................. GTAGGATTTTGTTAATCAAGGGTTCTTTTCAT 5663 29 100.0 32 ............................. TATCCCATACGCAAGTCGGTTTAACGAATTGA 5602 29 100.0 32 ............................. TTAATCCATTGCAGTCTCAAATTCAGTTCCCA 5541 29 100.0 32 ............................. ATTTACGAAAAATTAAACAGGGAATATTATAA 5480 29 100.0 32 ............................. TGGATTGATCGTTGCAAAGCGGTTGAGACAGA 5419 29 100.0 32 ............................. TATCTTTCGACGGGCGAATCAGTTATTACATT 5358 29 100.0 32 ............................. TGCAGCGATCCTAATAGATGAGCAATCTCGCA 5297 29 100.0 32 ............................. GTTCAGCAATCGTATTACCACGATTAAAGTTA 5236 29 100.0 32 ............................. TGAAAATCCATTTAGATAGTTCAGACGAAATC 5175 29 100.0 32 ............................. CTTCAGGTGTTGATTGAGAACTAGAAGCTCCA 5114 29 100.0 32 ............................. GCTCCTGAAATATATTCAATAGTGGAATTTGC 5053 29 100.0 32 ............................. ACTTGTTGAGGTAACTTTATCCATTTAGTAGT 4992 29 100.0 32 ............................. TCTGAATCATCTTTAGAAATCGTGGAAGGTTT 4931 29 100.0 32 ............................. CCCGCGAATCTCCGGATGTCCCGGCGGATTGT 4870 29 100.0 32 ............................. TCCAACGACTGACTTCTGTTTATCTCCTCTTT 4809 29 100.0 32 ............................. AACTCTTCCACAGTTATCTTCTATCGCAAATA 4748 29 100.0 32 ............................. TCTATGGCCTTAGATGTTCCTTCCTTGTAATT 4687 29 100.0 32 ............................. ATTATCAAAAATCCTACGTTATGCGAGATTGC 4626 29 100.0 32 ............................. ATCATAACTTGGCTCCCCAACGATATTTGATT 4565 29 100.0 32 ............................. AAGATGCATTTTTTAAAAATTCAACAAAAGAT 4504 29 100.0 32 ............................. TGGGAATCACGGATCTTGCTCAATCGGGTGTA 4443 29 100.0 32 ............................. GCCCCAAAATAGGTCTCACTACCTTCGGGACC 4382 29 100.0 32 ............................. ATCCTCTGGGTTGCCAAATCAAAATGCCCTTT 4321 29 100.0 32 ............................. TTTTTCCGCAACCTTGCGTTGTGTCAAACCCT 4260 29 100.0 32 ............................. CGTATAGCCTGTTCATGGATGGAAAAACAAAT 4199 29 96.6 32 .C........................... TTCCGGTCCTCCGACGTATATTGTCCATCCGG 4138 29 93.1 0 ...........................TA | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : GCAAAAGCGGAAACTTCCGTGGAGTCTAAAGCCAGATTCTTACTTCGTGACAAATTAAAAGAAACAAGACTGATCAAACGAATCATACCGGATATTATGGAGATACTATATGGTGATCGTGATTTTAGAGAACTCTTCACCGAGCCAGAGGGGAGAGATGTCGCGATTAACTCTTGAGTTAAAAGCAGGCGTCTATGCGGGCAATATCAATCGACGTGTTCGAGAAAAACTTTGGGAAAAAATTATTACGGATTGGAAATCAAATGCTTTGATGATTTATACTACAAACAACGAACAAGGGTATGCCGCATTGTCAAACGGAGATACAACGAGGGAAATCGTGGAAATCGAAGGCATGATCTTGACCCAATTTACGAGAACGGAATCGCCTCAGAAAAAAGGAAAAAAGAAAGTAAAATCGGATCCATTTCCTATTTCAGACGGCGACTGACCAAATTTATCTTGTCAAATGTATCAGAACTACTTAACTAATCTTTAGC # Right flank : GGTCAATTCCGCCTAACGTCTGACCATCAGGGCATAAAAAAGCCAAGCTGCTTGAGCTTGGCCTATCTTAAATTGATATACCTTTACAACATATAAACTGCGATAGAGAGTTTGTCCTATTTGAAATCTTCTTAGATTTCTTCCTGGCGTTGTTGAATATTAGCAAGGTCTTGAGTTGTCACTCAAGACTTTCGTAATATGGTCAAGCCTCACGACCGATTAGTATCACTCGACTCAATGTGTTACCACACTTGCATCTGTGACCTATCAACCAAATCATCTCTTTGGGGTCTTTAGGGGATTGCTCCCAGGGAGATCTTATCTTCAGAAGGGTTTCCCACTTATATGCTTTCAGCGGTTATCCCTGCCGAACATAGCTACTCAGCGTTGCTTCTGGCGAAACAACTGATACACCAGAGGTTCGTCCATCCCGGTCCTCTCGTACTAGGGACAGATTCCGTCAAATCTCCAACGCCTGCGATGGATAGGGACCGAACTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4022-3628 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANCE01000080.1 Leptospira kirschneri serovar Bulgarica str. Nikolaevo ctg7180000006296, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 4021 36 100.0 36 .................................... TTAGAAACATTATTACCGTTAGGATTAAATTTAGTT 3949 36 100.0 34 .................................... TTTCCGCTAGGTATCCCTCGACCCCGCTGTTTCA 3879 36 100.0 36 .................................... AAGTAGGCCAGGTGCCCTTGCGGCTACCGTCCTGCG 3807 36 100.0 36 .................................... GCTAGTATTGCGTATTGTTTGAGTATTATAAAATCG 3735 36 100.0 34 .................................... GCGACGTTTTTGTCTATACCAGCGAGCCGAACAC 3665 36 91.7 0 ..............................A.C..A | AC [3634] ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 98.6 35 CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : AATTGGCTAAAGTTATCGAAAAAGAAGACGACGTATTTTACCTGACTCTTTGCGCTAAATGCGCCTCCGGAGCTCACACCCAAGAGAAAAAATCGGCCTGGCCAGAGGCTCCCAAAACTCTCAAAATTCTATAATTCAAGTATCTATTTATGGCATAGACATAATTCCCTTTTTTTAGCATCAAAATTAGCGTCTTAGTCCAAACATAACTTCGTATTCGTCCATCTTTATAGAGATTCAGAAATAACCGCATTCTAATAGGAGTTAGTTGAAGTTATTTTCTTTCTTGCGAAAATTCTGGTCCAATTTATTATCAAATACGGATCAGAACATACTTGAATTGCTATTTCCAAATCCTAAAGGCGGATTGACTCAAAATATAATTTATTAAAGAAATTCGAAATGAAAAAAAGTTATAAAAAGCAATATTCTTGTTCACCCTCTATATTTTCCTTTGTATCGACAATCTCTACACCTAAAAGCTATAAGATTAAAATGCT # Right flank : CCCACAAGTTGAATAGGATTTTAGAATCAAAATTGAACTAAAGCAAAACGCTTTCCTGAATGCCGATCCTTAGAGAGGCATTCGCTGAGTTTTACAGAGGTTTTGTCGTAATTCCCACAGATTTAATATTGAGATCCAAATACTTGTGGGGTTGGTTATGATAGGAAGCGAGATAGCCTTAGATAGCGGAGCATATCGAACGACTCATAGGGAGTGAGATTGAGTTAAACCGAAGGCACTTTTGCGTAGTAAAACCGAGCGCCAATAGTAGTGAGACGTTGATTTACCAACTTGACTTTTTGGTAAAGTAGAATGGGTTTCGAGACTTTCTGTAAATATTACGACAATGTGCCGGTTAACTTGTTTTCGGTATCATCCGATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCATGAAAAGATTTTGTTTTCAAACAAACCCCCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGCGCCGGATTCGCCCA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //