Array 1 15059-15354 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AUNK01000024.1 Mannheimia haemolytica D35 Cont12, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     15059	    32	 100.0	    35	................................	ATTTCTCAGGGTAAAATCCAAGTAAATGTACCGAA	
     15126	    32	 100.0	    33	................................	ATTTTTAGGTTATCCCCGAGCAAACATTGCTTG  	
     15191	    32	 100.0	    33	................................	CCTCTAAAATCATAACTTTCGTTAAAGCATGCG  	
     15256	    32	 100.0	    35	................................	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG	
     15323	    32	  96.9	     0	.......................T........	|                                  	
==========	======	======	======	================================	===================================	==================
         5	    32	  99.4	    34	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                   	       

# Left flank :   ATCGGGAAGAAATGCTGGCTTTAATTTTAGATCGCAGTGATGATAATGCTCCGAATCAGGCGGCGCGTTTTACTGAGCATGTTCGCGCATTAAAAGAGCAAACATTGAATAAGGAAGAAAGAAATGATGTTTTGGAAACGTTTACTGTTGATTCGCCAATTCCGTATTCTATTGAATTATTGTTAGCTCGTTTAGATAAAGATAATTCTGAGATGGTACCTAAAGAGGGAGGTTCAGGAACAAAGCAAGGTCCTTGGTATAGTAAGTTGTCTAGGTTTATGGGAAGGATGAAAGCCAAAATAGATGACAGACGTTGCGGTTTTATGTTCCAACCGCCAGTAGAGTGCAACAGCTATGGGTGGCTGGAAAATATGTTGTCAAAACTGTTTTCTGCTTCTGAGAGCGAAAAAGGGATAAAAATTATTGATTTTTCGGAAGTCCCGTCGGATGTTTTACCGATTGTTACTTTGCAAATAAAAATACCAATGCCAAAACATTAC
# Right flank :  CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATAGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA

# Questionable array : NO	 Score: 9.03
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [8,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-1.40,-2.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.78,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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