Array 1 2185763-2184393 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGTU01000001.1 Klebsiella pneumoniae strain UCI110 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2185762 28 100.0 33 ............................ TGCACCAGGTAAATTGCTTGGCACGAATACTCC 2185701 28 100.0 33 ............................ CTGTACCAGAAACGTTTTCTATATTTAGAACGT 2185640 28 100.0 33 ............................ TGAGCACCGAGATATCATCATCGCAACAGGACT 2185579 28 100.0 33 ............................ CACTTATTTCCAGATTGTGGATAATGAGGCGCT 2185518 28 100.0 33 ............................ CACCACGGATAGTTGGCTGAGAGGCCGAAAGCA 2185457 28 100.0 33 ............................ CTCGACCCGCTTGAGCGTGCAAAGGCTTATTTG 2185396 28 100.0 33 ............................ CCAGAAGCTACAGGAAGAAGCGGCAAGGCTTGA 2185335 28 100.0 33 ............................ CGTTATTGATGCCGCCGTTGAGGAAGCGAAAGC 2185274 28 100.0 33 ............................ CCCGCCGAAGCGGGTTAAAGGGTGGTGGGTGAT 2185213 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 2185152 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 2185091 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 2185030 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 2184969 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 2184908 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 2184847 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 2184786 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 2184725 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 2184664 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 2184603 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 2184542 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 2184481 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 2184420 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : CCTTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTG # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTAACCTGTTTCTGTAGCTTAAACCGTCTTCCCCACGCACGTGGGGGTGTTTCTATTAATGCTTACGTTTCGTGGTTTGAGGATGAGTCTTCCCCACGCACGTGGGGGTGTTTCCGTCGTGAATTACGGCAATACGCTGGACCGCAAGTCTTCCCCACGCACGTGGGGGTGTTTCCAGTACCGCCAGCAGCGCCTTGATGCCATGTGGGTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2195275-2194514 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGTU01000001.1 Klebsiella pneumoniae strain UCI110 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2195274 28 96.4 33 .............A.............. CGTAACTTTGTTTTTCTCATCCACGCTGAAGTG 2195213 28 96.4 33 .............A.............. TCATGTTGTGGAGCGATATACAGGCTGCATGCG 2195152 28 96.4 33 .............A.............. CAGGTAAGAGCATTGTCAGGTAGCTTCAGGGGA 2195091 28 96.4 33 .............A.............. TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 2195030 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 2194969 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 2194908 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 2194847 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 2194786 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 2194725 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 2194664 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [2194659] 2194602 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 2194541 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.2 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //