Array 1 468454-469884 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCF01000001.1 Salmonella enterica subsp. enterica serovar Istanbul strain BCW_2704 NODE_1_length_644375_cov_6.01124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 468454 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 468515 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 468576 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 468637 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 468698 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 468759 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 468820 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 468881 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 468942 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 469003 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 469064 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 469125 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 469186 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 469247 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 469308 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 469369 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 469430 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 469491 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 469552 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 469613 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 469674 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 469735 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 469796 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 469857 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 486566-488305 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCF01000001.1 Salmonella enterica subsp. enterica serovar Istanbul strain BCW_2704 NODE_1_length_644375_cov_6.01124, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 486566 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 486627 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 486688 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 486749 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 486810 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 486871 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 486932 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 486993 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 487054 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 487115 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 487176 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 487237 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 487298 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 487359 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 487420 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 487481 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 487542 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 487603 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 487665 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 487727 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 487788 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 487849 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 487910 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 487971 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 488032 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 488093 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 488154 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 488215 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 488276 29 100.0 0 ............................. | A [488303] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //